| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3859 |
|---|
| Symbol | |
|---|
| ID | 8546254 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 5311118 |
|---|
| End bp | 5311921 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 646388530 |
|---|
| Product | RNA methyltransferase, TrmH family, group 3 |
|---|
| Protein accession | YP_003268251 |
|---|
| Protein GI | 262197042 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0566] rRNA methylases |
|---|
| TIGRFAM ID | [TIGR00186] rRNA methylase, putative, group 3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.119823 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0729978 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACAC AGCGCTTGGT CTATGGAGTC GGTCCGGTCG AGGAGCTGCT CGGCAGGCGC
GCGCGCGAAA TCGCCGTGCT GTACGTCAAC CCCTCGCGCC GCTCGCGCCA GCGCGCGGGC
GATCCCGTGG CCGCAGTGGC CGAGCAGGCG CGGCGCCGCG GCGTGAGCGT CGAGGAGCTG
AGCCGCGAGC AGCTCGACGC GCTGGTGGCC GGGCGCGGCG ACGCCGAGGA CGGCGGGCGC
GTGCATCACC AGGGCGTGGT GGCCCTGGTC GGCGCCTTCG AGTACGCGGC GCTCGAGGAC
CTGATCGCGG CGCCCCGGCA GCGTCCGGCG CTGTTCGTCG CGCTCGACAG CGTCACCGAT
CCGCACAACC TGGGCGCGAT CGTGCGCTCG GCCCATGTGC TCGGCGCCGA CGGCGTCATC
CTGCCCAAGG ACCGGGCCGC GCAGGTGAGC GGCGTAGTGA CCAAGGTGTC GGCCGGCGCC
ACCGAGCAGA TCGCGATCGC CCAGGTGACC AACCTGGCGC GCGCGCTCGA GCAGCTCAAG
CAGGCCGAGG TGTGGATCGC GGGTCTGGCA GCGGGCGAGG GCGCGACCTC GCTGCCGGCC
TTCGACGCCA CCGGCGCGCT GTGCCTGGTG CTCGGCGCCG AGGGCACGGG CCTGCGCCCG
CTGGTGGCGC GGACCTGCGA CTTCCTCATC GAGATCCCCA TGCTGGGCGC GGGCGTGGGC
TCGCTCAACG TCTCGGTCGC CGCCGGCGTC GCGCTGTACG AGGTGGCCCG GCAGCGCGCG
GCGCAGGCAT CGGCGTCAGC GTAA
|
|---|
| Protein sequence | MATQRLVYGV GPVEELLGRR AREIAVLYVN PSRRSRQRAG DPVAAVAEQA RRRGVSVEEL
SREQLDALVA GRGDAEDGGR VHHQGVVALV GAFEYAALED LIAAPRQRPA LFVALDSVTD
PHNLGAIVRS AHVLGADGVI LPKDRAAQVS GVVTKVSAGA TEQIAIAQVT NLARALEQLK
QAEVWIAGLA AGEGATSLPA FDATGALCLV LGAEGTGLRP LVARTCDFLI EIPMLGAGVG
SLNVSVAAGV ALYEVARQRA AQASASA
|
|---|
| |