Gene Hoch_3780 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_3780 
Symbol 
ID8546173 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp5191717 
End bp5192607 
Gene Length891 bp 
Protein Length296 aa 
Translation table11 
GC content68% 
IMG OID646388450 
Product3-hydroxybutyryl-CoA dehydrogenase 
Protein accessionYP_003268173 
Protein GI262196964 
COG category[I] Lipid transport and metabolism 
COG ID[COG1250] 3-hydroxyacyl-CoA dehydrogenase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.963902 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.273576 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGAGG CAAACGAGAT CAAGCTGCTC GGCGTAGTCG GCGCCGGCCA GATGGGGCGC 
GGTATCGCTC AGGTGGCGGC GCTCGCCGGC ATCGAGGTGC TCATCCTCGA TGAGAACGCC
GAGCTGGCGC AGGCCGCGAT CAACAAGATC GACAACACGA TGGTCAAGCT GGTCGACAAG
GGCAAGCTCG ACGCCTCGGC GCACGAGAGC GCGGTCGGCC GGCTGGCGGC CGCGGCGGCG
ATCAAGCCGC TGAGCCGCTG CGACATGATC ATCGAGGCGG TGCCCGAGGA CCTCGCGATC
AAGCGCGAGC TGTTCACCAA GCTCGACCGC GACACCGGCG CCATCCTGGC GACCAACACC
TCGTCGATCT CGATCACCAA GATCGCGGCG ATGACCTCGC GGCCGCAGCA GGTGATCGGC
ATGCACTTCA TGAACCCGGT GCCGCGGATG AAGCTGGTCG AGGTGATCCG CGGCTTGGCC
ACCGACGACG CGACCTACGC GACCACCATG GCGCTGGCCA AGAAGCTGGG CAAGACCACG
GTGACTTCGC GCGACGTGCC CGGCTTCATC GTCAACCGCA TCCTCATCCC GCTGCTCAAC
GAGGCCTGCT TCGCGCTCTA CGAGGGCCTG GGCACGGCGG CCGACATCGA CACCGGCGTC
GAGCTGGGGC TCAATCACCC GATGGGGCCG CTCACGCTGG CCGACTTCAT CGGCCTCGAC
ACCTGTCTGT CGATCGCCGA GGTGCTGCAC GGCGAGCTGG GCGATCCCAA GTACCGGCCG
TGCCCGCTGC TGCGGCAGTA CGTGGACGCC GGCTGGCTCG GCCGCAAGAG CGGTCGCGGC
TTCTACCGCT ACGACGAGGC GGGCAAGAAG CTCGCCGACG GCGCCGCCTA G
 
Protein sequence
MAEANEIKLL GVVGAGQMGR GIAQVAALAG IEVLILDENA ELAQAAINKI DNTMVKLVDK 
GKLDASAHES AVGRLAAAAA IKPLSRCDMI IEAVPEDLAI KRELFTKLDR DTGAILATNT
SSISITKIAA MTSRPQQVIG MHFMNPVPRM KLVEVIRGLA TDDATYATTM ALAKKLGKTT
VTSRDVPGFI VNRILIPLLN EACFALYEGL GTAADIDTGV ELGLNHPMGP LTLADFIGLD
TCLSIAEVLH GELGDPKYRP CPLLRQYVDA GWLGRKSGRG FYRYDEAGKK LADGAA