Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_3688 |
Symbol | |
ID | 8546078 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | - |
Start bp | 5074082 |
End bp | 5075695 |
Gene Length | 1614 bp |
Protein Length | 537 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 646388356 |
Product | methylmalonyl-CoA mutase, large subunit |
Protein accession | YP_003268082 |
Protein GI | 262196873 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit |
TIGRFAM ID | [TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0115893 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATCCCGG CCATCGTGAC CGCGGAAAAG AAGACCCATC GCACCGACGC CGGCATCGAG ATCCAGGGAG CCTACGGGCC CGCCGACCTG CCCGAGGGCT GGGATGCCGA GCGCGAGCTC GGCGCCCCCG GCGCCTACCC ATACACCCGC GGCATCCGCG AGACCATGTA CCGCGGCCGC AACTGGACCA TGCGCCAGTA CGCGGGCTTC GGCACCGCCG CGGAGTCGAA CCAGCGCTAC CACTACCTGC TCTCACAGGG CAGCAAGGGC CTGTCGGTGG CCTTCGACCT GCCGACGCAG ATGGGCCGCG ACTCCGACCA CGCCATGTCC CGCGGCGAGG TCGGCCGGGT CGGCGTGGCC ATCGACTCGC TCGAGGATAT GCGCGTGCTG CTCGACCGCC TGCCGCTCGA TCAGATCTCG ACCTCGATGA CCATCAACGC CACCGCGGCC ACGCTGCTGG CCCTGTACGT GGCGGTCGCC GACGAGCGCG GCATCGCGCG CTCGGCCCTG CGCGGCACCA TCCAGAACGA CATCCTCAAG GAGTACATCG CGCGCGGCAC CTACATCTAT CCGCCCGCGG GCTCCATGCG GCTCATCACC GACACCTTCA CCTTCTGCAA CGCCGAGGTG CCGCAGTGGA ACACGGTGTC GATCAGCGGC TACCACATCC GCGAGGCCGG CGCCGACGCC GTGCAGGAGG TCGCGTTCAC GCTCGCCGAC GGCATCACCT ACGTCGAGAC CGCGCTCGCC GCCGGCCTCG ACGTCGACGA CTTCGCGCCG CGGCTGTCGT TCTTCTTCAA CGTGCACAAC AACTTCCTCG AGGAGGTCGC CAAGTTCCGG GCCGCCCGGC GCATGTGGGC GCGCATCATG AAAGAGCGCT TCGGCGCCAA GAAGCCCAAG AGCTGGCTCT TGCGCTTCCA CAGCCAGACC GCGGGCGTGA CCCTGCAGGC CCAGCAGCCG CTGGTCAACG TGTGCCGCGT GACCCTGCAG GCGCTGGCCT CGGTGCTCGG CGGCACCCAG TCGCTGCACA CCAACTCCTA CGACGAGGCC CTGGGCCTGC CCACCGAGGA GTCGGCGCGG CTGGCGCTGC GCACCCAGCA GGTCATCGCC CACGAGTCCG GGGTCACCGA CTTCATCGAC CCCTTCGCCG GCTCCTACGC CATCGAGAGC CTCACCGATC GCATCGAGCG CGACGCCCGC GCCTACCTGG CCAAGATCGA CGAGCTCGGC GGCGTGATCC CGGCCATCGA GCAGGGCTAC ATGCAGCGCG AGATCCAGCG CCGCGCCTAC GAGCATCAGC GCGCGGTCGA GACCCGCGCC AAGATCGTCG TCGGCGTCAA CGAGTTCCAG CAGCAGGAAG AGGCGCCGGT GGACATCGCC GCCATCGACC CCGAGCTCGA GCGCGCCCAG GTCGAGCGCC TCAGCGCCCT GCGCGCGCGT CGCGACGCCG CCGAGACCGA GCGCGCGCTC AAGAACCTGG GCGACGCCGC CCGCGGCAGC GACAACCTGC TGCCCGCCAT CCTCGGCGCG GTCAAGGCCA TGGCCACCGT GGGCGAGATC GCCGACGTCA TGCGCGAGAT CTACGGCGAG TACCAGCCGA CCTTCGCCAT GTAG
|
Protein sequence | MIPAIVTAEK KTHRTDAGIE IQGAYGPADL PEGWDAEREL GAPGAYPYTR GIRETMYRGR NWTMRQYAGF GTAAESNQRY HYLLSQGSKG LSVAFDLPTQ MGRDSDHAMS RGEVGRVGVA IDSLEDMRVL LDRLPLDQIS TSMTINATAA TLLALYVAVA DERGIARSAL RGTIQNDILK EYIARGTYIY PPAGSMRLIT DTFTFCNAEV PQWNTVSISG YHIREAGADA VQEVAFTLAD GITYVETALA AGLDVDDFAP RLSFFFNVHN NFLEEVAKFR AARRMWARIM KERFGAKKPK SWLLRFHSQT AGVTLQAQQP LVNVCRVTLQ ALASVLGGTQ SLHTNSYDEA LGLPTEESAR LALRTQQVIA HESGVTDFID PFAGSYAIES LTDRIERDAR AYLAKIDELG GVIPAIEQGY MQREIQRRAY EHQRAVETRA KIVVGVNEFQ QQEEAPVDIA AIDPELERAQ VERLSALRAR RDAAETERAL KNLGDAARGS DNLLPAILGA VKAMATVGEI ADVMREIYGE YQPTFAM
|
| |