| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3452 |
|---|
| Symbol | |
|---|
| ID | 8545841 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 4765649 |
|---|
| End bp | 4767226 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 646388120 |
|---|
| Product | uroporphyrin-III C-methyltransferase |
|---|
| Protein accession | YP_003267847 |
|---|
| Protein GI | 262196638 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0007] Uroporphyrinogen-III methylase |
|---|
| TIGRFAM ID | [TIGR01469] uroporphyrin-III C-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.305578 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.171928 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTCCG CTTCGAGCAC TGGCGTGGTC TATCTCGTGG GGGCCGGCCC CGGCGACCCC
GGTCTCCTCA CCCGACGCGG CGCCGAGGTG CTGGGTCGGG CCGAGGTGCT GGTCTACGAC
GGCCTGGTGC ACACCGCGCT GCTCGAGCTG GTGCCGAGCA CCTGCACGCG CGTGTACGCG
GGCAAGAAGC ACGCGCGCGG CCGGCCGCCG CTCACCCAGG ACGAGATCAA CGCCGAGCTC
ATCGCCCACG CCCGCGCCGG CAAGCGCGTG GTCCGGCTCA AGGGCGGCGA TCCCTTTGTT
TTCGGACGCG GCGCCGAAGA GTGTCGCGCG CTGCGCGAGG CCGGGCTGGC CTTCGAGATC
GTGCCCGGGG TGACCGCGGC CACGGCCGTG CCCGCCTACG CCGGTATCCC GCTCACCGCG
CGCGATCGCA CCTCGAGCGT GGCCTTTGCA ACCGGCCACG AGCAGCCCGG CAAAGGCGAC
TCGGCCATCG ACTGGCAGGC GCTCGCCAAG GTCGGCACCC TGGTGCTGTT CATGGCCGTG
CGCACGGCCG CCGAGTGCGC CCAGGCGCTG ATCGCGGCCG GTCGCGACCC GCAGACGCCG
GCGGCCGCCG TCTACTGGGG CACCACGGCG CGGCAGCGCA CGGTGGTGGC GCCGCTGGTC
GAGCTGGCTC AGGCCATGGA CCGGGCCGCG CTCAAGCCGC CGGCGCTGCT CGTGGTCGGC
GAGGTGGTGG CGCTCAGGCC GCAGCTCGAC TGGTTCGAGC AGCGCCCGCT CTTTGGCCTG
CGCGTGCTGG TGCCGCGGGC CGAGCACCAG GCCGCGTCCT TTGCCGCGCG CCTGCGCGAG
CTGGGCGCCG AGCCCGTGCT CATGCCGGTG ACCCGCGTGG CGGCGCCGGC AGAGCCCGAC
CCGGCCTGGG CCCAGGTGCT GGAGTCGTCG TACACCTGGA CGATCTTCAC CAGCGCCAAC
GCGGTCGAGC AGTTCTTCGC CGCGCTGCGC GCCCGCGGCC GCGACGCTCG CTTCCTCGGC
GGCGCGCGTC TGGCCTGCGT GGGCCGGGCC ACCGAGGCGG CGCTCGCGGC CCAGGGCCTG
ATCTGCGATC TGCTGCCCGA GCGCGGCGAC GCCGCCGGTG TGGCCGCCGC CGTCCTCGCC
GCCAGCGAGG CGGCGGGCGA GTCCGTTGCC GCTCAGCGCG TGCTCTTGCC GCGCGCGGCC
GAGGGCCGGG AAGAGGCCAT CGCGGCGCTG CGTGCGGCCG GCTGCGCGGT GCAGCCGCTC
ACCGTCTACC GCAGCGAGAC CACGCCCAGC GACCATCCCA GCGTCGAGGA CGGCGTGCAC
GCGCTGCGCA CCGGCGCCAT CGACGCGGTC GCCTTCTTCG CGCCCTCGCA GGTGCAGGCG
CTGCTCGACA TCGCCGAGGC CGCCGGTCTC ACCCAGGCCG AGGTCGTGGA GCGCTGCGCG
ATCGTCGCCG CGATCGGGGC GACCACCCAG GCCGCGCTCG AGCAGCGCGG CATCGCCGTC
CACGCGGCGC CGGAGCGACC CGAGGCCGCG CTGCTGGTCG AGGCCCTCAT CGCCGCTCGC
GCCCGGCCGC GCGACTGA
|
|---|
| Protein sequence | MRSASSTGVV YLVGAGPGDP GLLTRRGAEV LGRAEVLVYD GLVHTALLEL VPSTCTRVYA
GKKHARGRPP LTQDEINAEL IAHARAGKRV VRLKGGDPFV FGRGAEECRA LREAGLAFEI
VPGVTAATAV PAYAGIPLTA RDRTSSVAFA TGHEQPGKGD SAIDWQALAK VGTLVLFMAV
RTAAECAQAL IAAGRDPQTP AAAVYWGTTA RQRTVVAPLV ELAQAMDRAA LKPPALLVVG
EVVALRPQLD WFEQRPLFGL RVLVPRAEHQ AASFAARLRE LGAEPVLMPV TRVAAPAEPD
PAWAQVLESS YTWTIFTSAN AVEQFFAALR ARGRDARFLG GARLACVGRA TEAALAAQGL
ICDLLPERGD AAGVAAAVLA ASEAAGESVA AQRVLLPRAA EGREEAIAAL RAAGCAVQPL
TVYRSETTPS DHPSVEDGVH ALRTGAIDAV AFFAPSQVQA LLDIAEAAGL TQAEVVERCA
IVAAIGATTQ AALEQRGIAV HAAPERPEAA LLVEALIAAR ARPRD
|
|---|
| |