Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_3323 |
Symbol | |
ID | 8545711 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | + |
Start bp | 4588739 |
End bp | 4590808 |
Gene Length | 2070 bp |
Protein Length | 689 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 646387990 |
Product | peptidase M61 domain protein |
Protein accession | YP_003267718 |
Protein GI | 262196509 |
COG category | [R] General function prediction only |
COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0788147 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00902527 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCAGCGCC ACCCAGGCGG GAGAAGTAAG CGATCGGCCG CGCCCGCGCG CAGCCGGCTA CCCCGGGTCG CGATCCTCGG CATCGCGTTC GCGCTGAGTC TCGGCACAGC CTGCCGCGGC GGCGGCGCCA GCGCACCGCC GGGCGACGAG GGCGCCGAGC CCGGCGCCAG CCGGCGCGCG CCCTCCGACG ATCCCGCGAG CCTCGACGCG CCGCCGCTGC GCATGCCGGC GCCCGGCGAT CCGCGCGTGC TCTACCAGCT CTCGTTTCCC GCGCCGCAGA CCCATTACGT CGAGGTCGAG GCCGTGATCC CGGTGCCCGC GGCCGCGACC GAAGCCGAAG CCGAAGCCGG GGAGGGCGAC GGCGCCGCCG CGGCCGATAG CGCACCGGGC GACGCCATGG ATCTGTTCAT GGCGGTGTGG ACGCCGGGTT CGTATCTGGT GCGCGAGTTT TCGCGTCACG TCGAGGACCT GCGCGTGAGC ACGCCCGCGG GCGCGACCCT GGCGGTCGAC AAGGTGCGCA AGAACCGCTG GCGGGTGCGT CTGCTGGGCA ACAAGGTCAA GAAGCGGCCC GAGCATGTGG TGGTTCGCTA CCGCGTGTAC GCGCGCGAGA TGAGCGTGCG CACCAGCTTT GTCGACGCCG ACATCGCCGT GCTCAACGGC GCCTCGCTGT TCGTGAGCGC GCTCGGCGGG CAAGCGCTGC CGCACGAGGT CCGGCTCAGC TTGCCGGCGG CTTGGTCGGA CAGCGTGACC GGCATGCCGG CGCACCCCGA GGGCGCGCCG CATCACTATC TGGCCGAGGA CTACGACGCG CTGGTCGATG CGCCCATCGT CGCCGGCAAC CCCACGCTGC ACAGCTTCGA GGCCGGCGGC GCCAACCACC GCATCGCCAC CTTCCTGAGC GACGAGCGCT GGGACGGCGA GCGCGTGGCG GCCGACATCG AGACCCTGGT GCGCGCTCAG ATCGACTTCT GGCGCCAGGT GCCGTATCGC GACTACGTGT TTCTCGCCGT GCTCTCGGGC ACCGGCGGCG GGCTCGAGCA CGGCAACTCG ACCCTGATGA TGGGCGACCC CTGGCTCACG CGCGAGCGCG ACAGCTACCT GCGCTGGCTC GGGCTGGCGA GCCACGAGTT CTTTCACACC TGGAACGTCA AGCGGCTGCG GCCGGTGGCT CTGGGCCCCT TCGACTACGA GAGCGAGGTC TACACCGAGT CGCTGTGGGT CGCCGAAGGC ATCACCTCGT ATTACGCGGA CCTGCTGCTG CGCCGCGCCG GCCTCATCGA TGACGCCGGC TACCTGCGCA ATCTGTCGCG GCGGCTGGGG CAGGTGCAGC GCGTGCCCGG GCGCCTGGTG CAGCCGCTGG CGGCCAGCTC CTACGACGCC TGGATCAAGT TCTATCGCAA CGACGAGAAC AGCGACAACA GCAGCGTGAG CTACTACAGC AAGGGCGCCC TGGTCGGCTT CCTGCTCGAC GCCGAGATCC GCCGCCAGAC CCGGGGCACG CGCAGCCTCG ACGACCTCAT GCGCCTGGCC TACGCGCGCT ACGCGGGCGA GCGCGGCTTC ACCGAGGCCG AGTTCCGGGC GCTGGCCGGC GAGATCGCGG GCGCCGATCT GTCGGCGTTT TTCGACCAGA CGGTCGACAG CGCGGCCGAG CTGTCCTTCG AGCCCGCGCT CGAGTACTTC GGCCTCACCA TGGGCAGCGG CGACGACGCC GCCGCCGGCA GCGCCGACGA GCCCGCGGGC TGGCTGGGCG CGAAGCTGCG CGAGGACGGC GGACGCTCGC TGGTGAGCGA GGTGCCGCGC GATACCCCCG CGCACCGCGC CGGCGTCAAC GTCGGCGACG AGCTGCTGGC CATCGACGAG CGCCGCATCT CCAGCGACGG CCCCGATGAT GTATTGCGCT ACCTGCGGCC GGGCGAGCGA GTCGAGCTGC TGGTCGCGCG CCGCGAGCGG CTGCGGCGCC TGGCTGTGAC GCTGGGCGAT AAGCCCGATG AGGAGTGGAA GCTGGCGCTG GCGCCGCGTC CCAGCAACGA TCAGGCGCGC CGGCGCGGCC GCTGGCTGTC GGGGTTATGA
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Protein sequence | MQRHPGGRSK RSAAPARSRL PRVAILGIAF ALSLGTACRG GGASAPPGDE GAEPGASRRA PSDDPASLDA PPLRMPAPGD PRVLYQLSFP APQTHYVEVE AVIPVPAAAT EAEAEAGEGD GAAAADSAPG DAMDLFMAVW TPGSYLVREF SRHVEDLRVS TPAGATLAVD KVRKNRWRVR LLGNKVKKRP EHVVVRYRVY AREMSVRTSF VDADIAVLNG ASLFVSALGG QALPHEVRLS LPAAWSDSVT GMPAHPEGAP HHYLAEDYDA LVDAPIVAGN PTLHSFEAGG ANHRIATFLS DERWDGERVA ADIETLVRAQ IDFWRQVPYR DYVFLAVLSG TGGGLEHGNS TLMMGDPWLT RERDSYLRWL GLASHEFFHT WNVKRLRPVA LGPFDYESEV YTESLWVAEG ITSYYADLLL RRAGLIDDAG YLRNLSRRLG QVQRVPGRLV QPLAASSYDA WIKFYRNDEN SDNSSVSYYS KGALVGFLLD AEIRRQTRGT RSLDDLMRLA YARYAGERGF TEAEFRALAG EIAGADLSAF FDQTVDSAAE LSFEPALEYF GLTMGSGDDA AAGSADEPAG WLGAKLREDG GRSLVSEVPR DTPAHRAGVN VGDELLAIDE RRISSDGPDD VLRYLRPGER VELLVARRER LRRLAVTLGD KPDEEWKLAL APRPSNDQAR RRGRWLSGL
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