Gene Hoch_3270 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_3270 
Symbol 
ID8545658 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand- 
Start bp4506622 
End bp4507629 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content66% 
IMG OID646387937 
Productglyceraldehyde-3-phosphate dehydrogenase, type I 
Protein accessionYP_003267665 
Protein GI262196456 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.518191 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.00928201 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGTCCAAGA CTCGTATCGG TATCAATGGA TTCGGCCGCA TCGGCCGCGG CTTCGTACGC 
TGCCTCAACG ACGACAAGAG CGCGTTCGAC CTCGCCCTCA TCAACGATCT CACCGACAAC 
AAGACCCTCG CGCACCTGCT CAAGTACGAC TCGGTGCACG GCCGCTTCGG CGGCGACGTC 
GAGGTCGCTG CCGAGGGTCT CTCCATCGCC GGTGACGCGG TCAAGATCAC GGCGATCAAA 
GACCCCGCCG AGCTGCCCTG GAGCGAGGAG AAGGTCGACA TCGTCCTCGA GTGCACGGGC 
ATCTTCCGCA AGCGCCCGCA GGCGCAGAAG CACCTCGACG CCGGCGCCAA GAAGGTCATC 
ATCAGCGCCC CGGCCGGCGA CCCCGACGCC ACCCTGGCCT GCGGTATCAA CCTCGACACC 
TACGACCCGG CCAAGCACCA CATCCTGTCG AACGCCTCGT GCACGACCAA CTGCCTGGCC 
CCGGTCTCCA AGGTGCTCAA CGATAGCTTC GGTATCGAGC ACGGTCTGAT GACCACCATC 
CACTCGTACA CCAACGACCA GCAGATCCTC GATCTGCCGC ACAAGGACCT GCGCCGCGCC 
CGCGCCGCCG CGCTGTCGAT GATCCCGACC TCGACCGGCG CCGCGCTGGC GCTCAAAGAG 
GTGCTGCCGG CGCTCGAGGG CAAGCTCGAC GGCATGGCCA TCCGCGTGCC CACGCCCAAC 
GTGTCGATCG TCGACCTCAC CGTCACCCTG AGCAAGTCGG CCTCGGTCGG CGCGGTCAAC 
GAGGCCTTCC GCGAGGCCGC GGCCGGTCCG CTCAAGGGCG TCCTCGGCGT CTCCGACGAG 
CCGCTGGTGT CGATCGACTA CAACGGCAAC AAGAACTCGG CCACCGTGGA TCTCTCGGAG 
ACCAAGGTGA TCGGCAACAT GGCCAAGGTG CTGGCCTGGT ACGACAACGA GGCCGGCTAC 
TCGCAGCGCC TCTTCGACCT CGCCAAGTTC GTCGCCTCCA AGCTCTAG
 
Protein sequence
MSKTRIGING FGRIGRGFVR CLNDDKSAFD LALINDLTDN KTLAHLLKYD SVHGRFGGDV 
EVAAEGLSIA GDAVKITAIK DPAELPWSEE KVDIVLECTG IFRKRPQAQK HLDAGAKKVI 
ISAPAGDPDA TLACGINLDT YDPAKHHILS NASCTTNCLA PVSKVLNDSF GIEHGLMTTI 
HSYTNDQQIL DLPHKDLRRA RAAALSMIPT STGAALALKE VLPALEGKLD GMAIRVPTPN 
VSIVDLTVTL SKSASVGAVN EAFREAAAGP LKGVLGVSDE PLVSIDYNGN KNSATVDLSE 
TKVIGNMAKV LAWYDNEAGY SQRLFDLAKF VASKL