| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3222 |
|---|
| Symbol | |
|---|
| ID | 8545610 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 4439904 |
|---|
| End bp | 4441247 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 646387889 |
|---|
| Product | two component, sigma54 specific, transcriptional regulator, Fis family |
|---|
| Protein accession | YP_003267617 |
|---|
| Protein GI | 262196408 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0905113 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACGCG TGCTCATCGT TGACGACGAG GAGGGGATCC GCAGCTTCGT GGCCGAGTGT
CTCGAGCTCG ACGGCCACGA GGTCGAGACC GCGGCCAGCG CCGAGGAGGC GCTCACGCGG
CTGCGCAAAG CGGCCTTTGC GCTGGTGGTT ACCGACCTGC GCATGCCGGG CATGAGCGGC
CTCGAGCTGC TCGAGATCGC GCAGGCCGAG CAGCCCGAGG TCGAGTTCAT CATGATCACG
GCGCACGGCA AGGTCGAGAC CGCGGTCCAG GCCATGAAGC TCGGCGCCTT CGACTACGTG
CAGAAGCCGG TGAGCAGCCC GGCCGAGCTG CGCCTGCTGG CCGCGCGCGC GCTCGAGCGC
CGCAGCCTGC GCGACCACGC CGAGCGCACC CGCGCGGGCG GCGACGACGC CCCGCAGCTC
AGCTACGGCG ACCCGGCCAT GGTGCCCGTC CTCGGCGCGC TCGAGCGGGT GGCGGCGACC
AACGCCACGG TGCTGCTGCT GGGCGAGAGC GGCAGCGGCA AGGAGGTGGC CGCGCGCGCC
GTCCACCGCA TGAGCGCGCG CGCCGACGGG CCCTTCGTGG CCGTCAACTG CGCCACGCTG
TCGGCCAATC TGCTCGAGAG CGAACTCTTC GGTCACGAGA AGGGCGCGTT CACGGGCGCC
ACCGCGCGCA AACGCGGGCG CATCGAGCTG GCCAGCGGCG GCACCTTTTT TCTCGACGAG
CTGGGCGAAA TGCCGATCGA GCTGCAGGCC AAGCTGTTGC GCGTGCTGCA GGAGCGCAGC
TTCGAGCGCG TCGGCGGCAC CCAGCCGATC CAGGCCGAGG TGCGCTGGGT CGCGGCCACC
AACCGCGATC TGCCGGCGCT GATGGCCGAG GGGCGCTTTC GCGAAGATCT CTACCACCGC
GTGGCCGTGT TCCCGGTGCG CCTGCCGCCG CTGCGCGAGC GCCCGGCCGA CATCGTGCCG
CTGGCCCAGG CGCTGCTGGT GCGCGTCGGC CGCGAGCTCG GCAAGACCGG GCTGCGGCTC
ACGCCCGAGG CCGCCGCGGC GCTGGCCCAG GCGCCCTGGC CGGGCAACGT CCGCGAGCTG
GCCAACGCGC TCGAACGCGC CGCCATTCTC AGCGACTCGA GCACCATCGC GCCCGAGCAT
CTGTGGCTCG ATCCCGGGGG CGCGCCGGCG TCGCAAGCGG CGGGCACGGC CGGCGCCGGG
GGCACGCTCG AGGACGTGGA AAAGCGCGCC ATCGCGGCCG CGCTCTCGGC CGAGGACAAC
AACCGACGGC GCGCGGCCGA GCGCCTGGGC ATCAGCGTCC GCTCGCTGTA CGACAAACTC
AAGCGCTACG GCATGGGCAA CTGA
|
|---|
| Protein sequence | MARVLIVDDE EGIRSFVAEC LELDGHEVET AASAEEALTR LRKAAFALVV TDLRMPGMSG
LELLEIAQAE QPEVEFIMIT AHGKVETAVQ AMKLGAFDYV QKPVSSPAEL RLLAARALER
RSLRDHAERT RAGGDDAPQL SYGDPAMVPV LGALERVAAT NATVLLLGES GSGKEVAARA
VHRMSARADG PFVAVNCATL SANLLESELF GHEKGAFTGA TARKRGRIEL ASGGTFFLDE
LGEMPIELQA KLLRVLQERS FERVGGTQPI QAEVRWVAAT NRDLPALMAE GRFREDLYHR
VAVFPVRLPP LRERPADIVP LAQALLVRVG RELGKTGLRL TPEAAAALAQ APWPGNVREL
ANALERAAIL SDSSTIAPEH LWLDPGGAPA SQAAGTAGAG GTLEDVEKRA IAAALSAEDN
NRRRAAERLG ISVRSLYDKL KRYGMGN
|
|---|
| |