Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_3200 |
Symbol | |
ID | 8545588 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | - |
Start bp | 4410257 |
End bp | 4411084 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 646387867 |
Product | MscS Mechanosensitive ion channel |
Protein accession | YP_003267595 |
Protein GI | 262196386 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.126037 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.165541 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGAATTCG AGATCGACAC AGTCCTGCAA CCGCTCGTCG CCTTCATCAC CGTCTATGGC ATTCAGTTCA TCGGCGCGAT CCTGATCCTG ATCCTGGGTC GCTTCGCCGC CAACATCGCC AAGCGCTCGG TGGCCCGCTT CATGAATTTC CGCCACGTGG ACAGCACCGT GGTGTCCTTC GTGAGCAGCC TGGCCTACTT CACCATCCTC ACCGTGGCCG TGCTGGCGGC GCTGTCGAAG TTCGGCGTCC AGACCACCTC GTTCATCGCC GTGCTGGGCG CCGCGGGCTT TGCCGTCGGC CTGGCGCTAC AGGGCTCGCT GTCGAACTTC TCGGCCGGCG TGCTGATCCT CTTGTTCCGG CCCTTCAAAG TCGGCGACTA CATCAAGGCC GGCGGCACCG AGGGCGAGGT CAAGGGCATC CACCTGTTCG TCACCGAGCT GGCCACCCTC GACAACGTCC AGGTCATCGT GCCCAACAGC GCCATCATGG GCGGCAACAT CTCCAACCTC TCGGGCTACG ACAAGCGCCG CGTCGACCTC GCGCTCGGCA TCAGCTACGG CGCGTCCATC GCCCAGGCCA CCGAGATCGC CAAGCGCGTC ATGTCCGAGG ACCCGCGCGT GCTCGCCGAG CCGGCGCCCA ACGTCGTGGT CCGCGGCTGG GGCGACTCCA GCATCGACAT CTTCGCCCTG CCCTGGGTCG ATCCCAAAGA TTACTGGGGC GTGTACTTCG ACATGCACCG CAAGCTCAAA GAGGCCTTTG ACGAGGCCGG CATTGAGATT CCCTTCCCGC AGCGCGTGGT CCACATGGCC AATGACGAGG CCGCATAG
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Protein sequence | MEFEIDTVLQ PLVAFITVYG IQFIGAILIL ILGRFAANIA KRSVARFMNF RHVDSTVVSF VSSLAYFTIL TVAVLAALSK FGVQTTSFIA VLGAAGFAVG LALQGSLSNF SAGVLILLFR PFKVGDYIKA GGTEGEVKGI HLFVTELATL DNVQVIVPNS AIMGGNISNL SGYDKRRVDL ALGISYGASI AQATEIAKRV MSEDPRVLAE PAPNVVVRGW GDSSIDIFAL PWVDPKDYWG VYFDMHRKLK EAFDEAGIEI PFPQRVVHMA NDEAA
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