Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_3073 |
Symbol | |
ID | 8545461 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | + |
Start bp | 4240515 |
End bp | 4242059 |
Gene Length | 1545 bp |
Protein Length | 514 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 646387744 |
Product | Pyridoxal-dependent decarboxylase |
Protein accession | YP_003267472 |
Protein GI | 262196263 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.441347 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.218881 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACATCA AGAAGCTTAT CGACGGCCCC CTCGGGCGCG TCCATCCCCG CGTCGCCAGC TTCGTCTACG ATCGGCTCAA GCGCATCCCG CTGGTGCGCC GGGTGGTCGA AAACGCATTC GCCGGCATGC TCGCGAGCAT GGAGGAGGAG CTCAAGCCGT ACAAAGGCGA GTTCGAGACC TTCGTCCGGC TGCCCGAGCA AGGCCGGAGA CGCGCCGAAA TCCTCGGCGA GATGCGCAGC TTCGCCGAGC GCGAGAGCGG GCAGTGGCGG GACGGATACG TCTCCGGCGC CGTGTATCAC GGCGACCAGG AACATATTGA ATTTCTCAAT CAGGTCTACG CCATCAACTC GCAGGTCAAT CCGCTGCACG TCGACATCTG GCCCAGCGCG ACCAAGTTCG AGGCCGAGAT CGTGGCCATG ACGGCGAGCA TGCTCGGCGC CGACGCCACC GCGCCCGCGC CCGAGGCCAA CGCGCGCTTC CCCGGCGCGG TCTGCGGCAC CGTGAGCTCG GGCGGCACCG AGTCGATCCT GCTGGCGATG AAGACCTATC GCGACTGGGG ACGCGCCGAG AAGGGCATCC GCCGGCCCAA CATGGTGGTG CCCGAGACCG CCCACGCGGC CTTTGACAAA GCCTCGCAAT ACTTCGGCAT CGAGGCCCGG CGGGTGCCGC TCACGGGCGA GTATCGCGCC GACGCGAGCG CGGCCGAGCA GCTCATCGAC AAGAACACCG TGGTCGTCGT CGGCTCGGCG CCCGCGTTTC CGCACGGCAT CATCGACCCC ATCGAGGAGC TGTCGGAGCT GGCGCGCGCG CGCGGCATCG GCTGCCACGT CGACGCGTGC CTGGGCGGCT TTTTGCTGCC GTGGGCGCGC GAGCTCGGCC ACCCGGTGCC GGACTTCGAT TTCCGCCTGC CGGGCGTGAC ATCGATGTCG GCCGACACGC ACAAATACGG CTACGCGGCC AAAGGCACCT CGGTGGTCAT GTACCGCGGC GAGGCGCTGC GCCATCATCA GTTCTTCACC ATCAGCGACT GGCCCGGCGG ATTGTATTTC TCGCCGACCC TGGCCGGCAG CCGTCCGGGC GCGCTCAGCG CCGCCTGCTG GGCGTCGATG GTGAGCATCG GCGCGGCCGG CTACCGCGAC GCAGCCGCGC GCATCCTGGA CGCGGCCGAG CGCATCAAGA CCGGCCTGCG CGCATTGCCA GCGATCGAGA TCCTGGGCGA TCCGCTGTGG GTCATCGCCT TTGCCGCGCG CGATGAGCGC GTGGACATCT ACCGGGTCAT GGCGCGCATG AGCCAGCGCG GCTGGTCGCT CAACGGCCTG CATCGGCCCG CGTGCGTGCA TCTGTGCGTC ACCCTGCGGC ACGCCGAGCC GGGCGTGGCC GAGCGCTTCG TCGCCGACCT GGGCGAGGCC ATCGCCGAGG TTGAAGCCGC CCCGGGCGAG GCCGAGGGCG CCGCGCCCGT GTACGGCATG GCCGCCACCA TCCCCGTGCG CGGCATGGTC GGCGAGATGC TGCGCCGCTA CATGGACCTG CTGTATCGGC CGTAG
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Protein sequence | MDIKKLIDGP LGRVHPRVAS FVYDRLKRIP LVRRVVENAF AGMLASMEEE LKPYKGEFET FVRLPEQGRR RAEILGEMRS FAERESGQWR DGYVSGAVYH GDQEHIEFLN QVYAINSQVN PLHVDIWPSA TKFEAEIVAM TASMLGADAT APAPEANARF PGAVCGTVSS GGTESILLAM KTYRDWGRAE KGIRRPNMVV PETAHAAFDK ASQYFGIEAR RVPLTGEYRA DASAAEQLID KNTVVVVGSA PAFPHGIIDP IEELSELARA RGIGCHVDAC LGGFLLPWAR ELGHPVPDFD FRLPGVTSMS ADTHKYGYAA KGTSVVMYRG EALRHHQFFT ISDWPGGLYF SPTLAGSRPG ALSAACWASM VSIGAAGYRD AAARILDAAE RIKTGLRALP AIEILGDPLW VIAFAARDER VDIYRVMARM SQRGWSLNGL HRPACVHLCV TLRHAEPGVA ERFVADLGEA IAEVEAAPGE AEGAAPVYGM AATIPVRGMV GEMLRRYMDL LYRP
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