| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_2396 |
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| Symbol | |
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| ID | 8544782 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | + |
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| Start bp | 3317263 |
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| End bp | 3319176 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 646387095 |
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| Product | protein-export membrane protein SecD |
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| Protein accession | YP_003266826 |
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| Protein GI | 262195617 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.564509 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCGCA AGATTCGTTG GCGAACATTC TGGCTAGGAG CACTGGTGGT TTTATCCATC
AGCTTGCTCA TCCCCACCCT CGTGCCCTCG GAGTCGATGC CGGCTTGGTT CAATCGGGTC
TTCAGCAAGA AGATCCAGCT CGGTTTGGAC CTTCAGGGCG GCCTGTACAC CGTCTACAGC
ATCGACCTCG ACAAAGCGGT CGATGACAAG GCGTCCGAGA TCAAGCGCGA GTTCGACGCC
AAGATGGCCG AGCGCAGCAT CGCCGGGCGC GTGACCACGC CGCGGCAGCC GGTGGGCGCC
ATCAACGTGA TCCTCGAGGA GGAGGCGCAG AAGTCGGCCA TCGATGCCGA CTTCCTGTCC
GACTACGCCG AGATCCTCGA GAACCGCGAC TGTCCCGAGG GCCTCGAGGC CACCTCGGTG
TGCCTGCTGG TGTCGCCGGA GTACGCCGAC GGCATCCGCA AGAGCGCGCA GGAGCAGGCG
CTGATCATCA TCCGCGATCG CATCAACAAG CGCGGCGTGG CCGAGCCCTC GGTCAAGAGC
AAGGGCAACC AGATCGTCGT CGAGCTGCCC GGTCTCGACG AGGAAGAGAT CGAGCGCGTC
AAAGACCTCA TCGGTCGCAC CGCCAAGCTC GAGTTCAAGA TGGTGGCCGA GAACTCGGAA
TACATGCGCG AGCTGTATCA GCACGTGTCC GAGGACGCGA AGGCCAAGGA GCTGGGCATC
GACGTCGGCG TGGACTTCTG GTCGCACGAC GAGAGCGGCA AGCAGTATCA GGACTACTAC
CTGAGCGCCG GTGACGTCGA TGAGTGGCTG CCGGTGGCCG AGGCCAAGGA GCGCGGCTGC
TGGAACGCCA ACAAGAGCGA AGTGCAGGGC GAGGTGCAGT GCACGATCAC GGGGCGACAG
CGCATCGCCG ACTATCTCGA CGAGCTGTTC GTGGCCGACG CCGAGATGGC TATCGATGAC
GAGCACCAGA TCGGTTACCA GCTCGTCAAT CCCGAGAGCG TGATGCGCGA TCAAGAGCGC
GAGGCCTACT GGCGCACCTA TTACCTGAAT CGCCCGGTCG AGCTCTCGGG TTCGTCGATC
GCCGACGCCT ACAAGTACTG GGATCCGACG ACCAACCGCC CGAGCGTGCT CATCGTCTTC
AACCGCTACG GTGGCCGCCG CTTCGGCGAT ATGACCTCGG TCAACATCGG CAAGAAGATG
GCCATCATCC TCGACGAGAC CGTCAACTCG GCTCCCGTCA TTCAGGACGC CATCACCGGC
GGGCGCTCGA CCATCACCAT GGGCGGCAGC TCCAACGCCG CCATCGAGGC CGAGGCCGAC
GACCTGGTCA GCGTGCTCAA GACCGGCTCG CTGCCGGCGC CGCTGCAGGA GGATTCGTCC
TCGGTCATCG GCCCGCTGCT GGGCGCCGAC GCCATCGAGA AGGCGCAGTT CGCGTTCGCT
CTGGGCGCGC TGCTGGTGCT GATCATCATG GTGTTCATCT ACCGCGTCTC GGGTTGGCTC
TCGATGGTGG CCCTGGTGCT CAACATCGGC TTCATGATGG CCATCCTGGC CGCGCTGGGC
GCCACGCTCA CGCTGCCCGG CATCGCCGCC TTGGTGCTCA CCGTGGGTAT GGCGGTGGAC
GCCAACATCA TCATTTACGA GCGCATTCGC GAGGAGCTAC GGCTCGGGAA ATCCGTGCGC
GGCGCCGTGG ACGCCGGCTT CAGCCGCGGC TTCTCGGCTA TCTTCGACGG TCAGATCACC
ACCGCGGTGG CCGCCTACGT GCTGCTTCAG TACGGATCCG GCCCCATCCG CGGCTTCGCC
GTCATGCTCA TCATCGGCAT CGGCTGCACG CTGTTCACTG CCACGTGGTG CACGCGTCTG
TTCTTCGAAT ACTACGTTGG CAAGGGACGG AAGGTCGAGC AGCTCTCCAT CTGA
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| Protein sequence | MDRKIRWRTF WLGALVVLSI SLLIPTLVPS ESMPAWFNRV FSKKIQLGLD LQGGLYTVYS
IDLDKAVDDK ASEIKREFDA KMAERSIAGR VTTPRQPVGA INVILEEEAQ KSAIDADFLS
DYAEILENRD CPEGLEATSV CLLVSPEYAD GIRKSAQEQA LIIIRDRINK RGVAEPSVKS
KGNQIVVELP GLDEEEIERV KDLIGRTAKL EFKMVAENSE YMRELYQHVS EDAKAKELGI
DVGVDFWSHD ESGKQYQDYY LSAGDVDEWL PVAEAKERGC WNANKSEVQG EVQCTITGRQ
RIADYLDELF VADAEMAIDD EHQIGYQLVN PESVMRDQER EAYWRTYYLN RPVELSGSSI
ADAYKYWDPT TNRPSVLIVF NRYGGRRFGD MTSVNIGKKM AIILDETVNS APVIQDAITG
GRSTITMGGS SNAAIEAEAD DLVSVLKTGS LPAPLQEDSS SVIGPLLGAD AIEKAQFAFA
LGALLVLIIM VFIYRVSGWL SMVALVLNIG FMMAILAALG ATLTLPGIAA LVLTVGMAVD
ANIIIYERIR EELRLGKSVR GAVDAGFSRG FSAIFDGQIT TAVAAYVLLQ YGSGPIRGFA
VMLIIGIGCT LFTATWCTRL FFEYYVGKGR KVEQLSI
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