| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_1954 |
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| Symbol | |
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| ID | 8544336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | + |
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| Start bp | 2693042 |
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| End bp | 2696149 |
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| Gene Length | 3108 bp |
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| Protein Length | 1035 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 646386658 |
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| Product | UDP-N-acetylmuramyl-tripeptide synthetase |
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| Protein accession | YP_003266393 |
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| Protein GI | 262195184 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0769] UDP-N-acetylmuramyl tripeptide synthase |
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| TIGRFAM ID | [TIGR01085] UDP-N-acetylmuramyl-tripeptide synthetase
[TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.922864 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.269934 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTGG CCACCTTGAT CCAAGATCTC GCGGAGCTCG CCGCGGTCCG CGTCGTCGGC
GATGACGCGC GCGATATCCG CGCCGTCCGC GACGACTCGC GCCGCGTCGG CCCGGGTGAT
CTCTTCGTCG CCGTGCGCGG CGCACGCACC GATGGCCACG CGTATCTGCC CGCCGTCATC
GACGCCGGCG CCGCGGCCGT GGTGGTCGAG CGCGCCATCG AGGATCCCGC CCTGGCCGCG
CGCGTCACCC AGGTGATCGT GCCCGAGGGC GCGCGTGCGC TCGGTGTCCT GGCCGCGCGC
ATGGCCGGCC GCCCGGGCGA GCGCATGCGC CTGGTCGGCA TCACGGGCAC CAACGGCAAG
ACCACGTGCA GCTACCTCAT CGAGTCGATC CTGCGCGCCC ACGACGCCAC CTGCGGCGTC
ATCGGCACCG TGAGCTACCG CTACGGCGCG CGCGAGGTGC CGGCGCCGTA CACCACGCCG
ACCGCGCTCA TCCTGCAAGA GGCGCTGGGC GAGATGGTCG CGGCCTCGTG CACGCACGCG
GTGCTCGAGG TGTCCTCGGC GGCGCTGGCC ATGGAGCGCT TGTCCGGCAC CACCGTCGAG
GTCGCCGCGT TCACCAACTT CACCCAGGAT CACCTCGACG TCCACGGCTC CATGGACGCC
TACCGCGCGG CCAAGGAGCG CCTGTTTCGC GACCACCTGG CCGAAAACGG CGTCGCCGTC
ATTGATGTCG ATGACAAGGC TGCGCCGCAC ATGATCGCGG CCGCCGGCGA GCGTCGGGTG
GTGCGGGTGT CGGCGCGGCC CGGGGCCACG GCCGCGGACG CCGAGGTGCG CGTGCTCGCG
GCCGAGACCA CGATCGCCGG CATCACGGCC GAGTTCGCCA CCCCGCGCGG CAGCTTCACG
CTGCGTGCGC CGGCCCTGCT CGGCCACTAC AACGTCGCCA ACCTGGCCGT GGCCGTGGCC
GTGTGCGACG CTCTCGATGT TCCCCACGCC ACCATCGCCC GCGGCATCGA GGCCATGAGC
GGCGTGCCCG GCCGGGTCGA GCGCGTGGCC AACGACGCCG GGCTCGACAT CCTGGTCGAC
TACGCGCACA CGCCCGACGC GCTCGCCAGC GTGCTCGCCG CGCTGCGCCC GCTCACCCAG
CGCCGCCTGC TGTGCGTGTT CGGCTGCGGC GGCGACCGGG ATGCGGACAA GCGTCCGAAG
ATGGGCGCGG CCGCGGCTGC CGGTGCCGAC CTGGTGGTCG TGACCTCGGA CAATCCCCGC
TCGGAGGCGC CGCGCGCCAT CATCGATCAG ATCTTGCCCG GGGTGCCGGC GCCGTTTTTC
GTCCACAGCG ACCGCCGCGT GGGCATCGCG GCCGCCGTGT TCGAGGCCGT GCCCGGCGAC
ATCGTGCTCA TCGCCGGCAA GGGCCACGAG ACCTATCAGA TCCTCGGCGA CGACACCGTG
CACTTCGACG ACCGCGAGGA GGCAGCGCGG GCCGCGGCCG CGCGCTGGGG CTTTCCTCTG
GCCGAGATGG CGGCCGCAGC CGGCGGCGTA TTGCACGCGC CCGAGGGCTG CGCCGAGGCG
GCCTCGCGGG TGGTGATCGA CGGCCGCCAG GTGGCGCCCG GCGACCTGTA CGTGGCCATC
CGCGGCGAGC AGCACGATGG CCACGCGTTC TGCGAGCAGG CCGCGAACGC CGGCGCGTGC
GCGCTCATGG TCGAGCGCGG TCGGGCGCCG CGCGACGCCG CGGGCAATGC GCTGAAGCTG
GCCGTGATCG AGGTCGATGA CACGCGCCTG GCCCTCGGCT CGGTGGCCCG CTGGCACCGC
GCCCGCTGGG GCGAGCTGCC GGTGTACGGC TGTCCGAATA CGGGTGGCGA TCGCGACGGC
GACAACGGCG ACGAGAGAGC GCGCGCGGCC AAGCCCGTGG TTGGCATCAC CGGCTCGGCC
GGCAAGACCA CCACCAAGGA GCTCATCGCC GCGGCTCTGA GCGCGCGCTA CGCGGTGCAC
GCCACGCGCG CCTCGTTCAA CAACGAGACC GGCGTGCCGC TCACCCTGCT GGCCCTGATG
CCGCACCACG GCGCCGCCGT CATCGAGATG GGCATGCGCG GCCTGGGCCA GATCGCGTAT
CTGGCCGAGC TGAGCGCGCC CACCGTGGCC GCGGTGCTCA ACGCCGGCAC CGCCCACATC
GGCGTGGTCG GCAGCGCCGA GGGCATCGTC CGCGGCAAGT CCGAGATCTT CGCCGCGCTG
GGCGAGGGCG GCGTGGCCGT GTACCCGGGC GATGACGAAC GACTGTCCGA ATACGCCCGT
GCGGCCGGGC GCGTGCTGCG CTTCACCCAG GCCCTGCCCA GCGGCGACGA GGTGCCCACG
CCGGCGCCGG CCGAGGTCTG CGCCGTGGCC TACGCGCCCG CTCATCGCGC CGGCCCCGGC
GCGGCGACAG ACGCGGCGAC AGACGCGGCG ACCGGCGCGG CGACCGGTGC GGCGACGAAG
GTCTTGGTCG GCGCCGACAT CGACCTGCGG GTGCAGCTCT CGCCCGCCGA TGATGCCCGC
GTGGTGCGCG TGCCGCTGGC CCTGGTGGGC CGGCACAACG CGGCCAACGC GGCCTGTGCG
CTGGCCTGCG CGATCGCGGC CGGCGTGTCG GCCGAGGACG CGGCCGCGGC CATGGGGCGA
GCCCGGCCGC CGGCGCTGCG CGGCCAGGTC CGCGAGCTGG CCGGCCGTCG CGTGCTGGTC
GATTGCTACA ACGCCAACCC CGCCTCGATG CGCGCGGCGT TGGCCACGCT CACCGAGCTG
GCGCGCGCCG ACGGCAGCCG CGCGCTGGCC GTGCTCGGCG ACATGCTCGA GCTCGGCGAC
GAGGCCGCCC GCGCCCACGC CGAAGTCGGA CAGATGGCCG GCGACCTCGA TGTCGCCGTC
ATCGCCCTCG GCGAACACGC CGCCGCCCTG GCCGGCGCCG GTGCCCCTGG CGACGATCTC
GCGCGCGTGG CCGCCAGCCC CGACGAGGCC GCCGCTTTCC TTCTGAGCCA CACCGCGCCC
GGCGATTGGG TGCTGGTGAA AGGCTCGCGC GGCATGCGCC TCGAGCGCGT GATCGACGCC
GCGCTCGTGC TCGTGTCTGC TCAAGAACGC CCCAGCGGAG AGACCTGA
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| Protein sequence | MKLATLIQDL AELAAVRVVG DDARDIRAVR DDSRRVGPGD LFVAVRGART DGHAYLPAVI
DAGAAAVVVE RAIEDPALAA RVTQVIVPEG ARALGVLAAR MAGRPGERMR LVGITGTNGK
TTCSYLIESI LRAHDATCGV IGTVSYRYGA REVPAPYTTP TALILQEALG EMVAASCTHA
VLEVSSAALA MERLSGTTVE VAAFTNFTQD HLDVHGSMDA YRAAKERLFR DHLAENGVAV
IDVDDKAAPH MIAAAGERRV VRVSARPGAT AADAEVRVLA AETTIAGITA EFATPRGSFT
LRAPALLGHY NVANLAVAVA VCDALDVPHA TIARGIEAMS GVPGRVERVA NDAGLDILVD
YAHTPDALAS VLAALRPLTQ RRLLCVFGCG GDRDADKRPK MGAAAAAGAD LVVVTSDNPR
SEAPRAIIDQ ILPGVPAPFF VHSDRRVGIA AAVFEAVPGD IVLIAGKGHE TYQILGDDTV
HFDDREEAAR AAAARWGFPL AEMAAAAGGV LHAPEGCAEA ASRVVIDGRQ VAPGDLYVAI
RGEQHDGHAF CEQAANAGAC ALMVERGRAP RDAAGNALKL AVIEVDDTRL ALGSVARWHR
ARWGELPVYG CPNTGGDRDG DNGDERARAA KPVVGITGSA GKTTTKELIA AALSARYAVH
ATRASFNNET GVPLTLLALM PHHGAAVIEM GMRGLGQIAY LAELSAPTVA AVLNAGTAHI
GVVGSAEGIV RGKSEIFAAL GEGGVAVYPG DDERLSEYAR AAGRVLRFTQ ALPSGDEVPT
PAPAEVCAVA YAPAHRAGPG AATDAATDAA TGAATGAATK VLVGADIDLR VQLSPADDAR
VVRVPLALVG RHNAANAACA LACAIAAGVS AEDAAAAMGR ARPPALRGQV RELAGRRVLV
DCYNANPASM RAALATLTEL ARADGSRALA VLGDMLELGD EAARAHAEVG QMAGDLDVAV
IALGEHAAAL AGAGAPGDDL ARVAASPDEA AAFLLSHTAP GDWVLVKGSR GMRLERVIDA
ALVLVSAQER PSGET
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