| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_1917 |
|---|
| Symbol | |
|---|
| ID | 8544299 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 2635164 |
|---|
| End bp | 2636555 |
|---|
| Gene Length | 1392 bp |
|---|
| Protein Length | 463 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 646386622 |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_003266357 |
|---|
| Protein GI | 262195148 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.797134 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCCCAAA AACCGCCCCC GCCCGCCGAG ATCAACGCCT CAGCCGACGC CCGCAAGCTC
GGCTTACTCG CGGCCACCGC CATCGTGGTC GCCAACATGA TCGGCACGGG CGTGTTCACG
TCCACGGGCT TCATGGTCCC CAACCTCGAG TCCGGGCCCA TCCTCATCAA CTGGCTGCTC
GGCGGCGTGC TAGCGCTGTG CGGCGCGGCC ACCTACGCCG AGCTCGGCAC CCTGATGCCG
CGCGTGGGCG GTGAATACGT CTACCTGCGC GAGGCCTATC ACCCCTCGGT GGGCTTTCTG
TCCGGCTGGG TGTCGCTGTT CGCCGGCTTC TCGGCGCCCA TCGCCGGCGC CGGCCTGGCC
TTCGGCGCCT ACCTGCACGC CATCGCGCCC GCGCTACCGG CAAAAGGCGC GGCCCTGGCG
CTGATCATCG CGCTCACCGC CCTGCACATG GCCGACGTGG TCTGGGGCAG CCGCATCCAG
ACCGGCTTCA CCCTGCTCAA GGTGGCCCTC ATCCTGGTCT TCATCGGCCT CGGCTTCGGC
GTCGGCGAGG GCGACTGGAG CAACCTCGAC AGCGCCGTGC CCGATGCCTC GTCCTCGGTG
CTGGCGCCGG CCTTCTGGAT CTCGCTGGTG TACGTGTCCT TCAGCTACTC GGGCTGGAAC
GCGGCCGCCT ACGTCGCCGG CGAAATCCGC GACCCGCAGC GCGTGCTGCC GCGCGCTCTG
CTGCTCGGCA CCGCCATCGT CACCGCCCTG TACCTGGCGC TCAACCTGCT GTTCCTGTAC
GCGGCTCCGG CCGAGGCCCT GGCCGGCAAA GCAGAAGTCG GACACGTGGC CGCCGTCGCC
CTGTTCGGCG AGCGCGCGGG CGGGTGGCTA TCGACCATCA TCGCCCTGGC CCTGGTATCG
GCCGTGAGCG CCATGGTCAT GGCCGGCCCG CGCGTGTACA CGGCCATGGC CGAAGACGGC
CTGTTCTTCT CCTTCCTGGC GGCGCGCAAC CGCCGCGGCG CGCCCCTGGG CAGCGTCGCG
CTGCAGGGCG CCCTGGCCTG CATCCTGGTG ATGATCGCCA GCCTGCGCGA GCTCATTCAG
TACATCGGCT TCACGCTCAG CATCATCGCC GCGCTCACCG TGCTCAGCGT GTTCGTCTTG
CGCGTGCGCC GCCCCGAATT GGCGCGTGCG GCCGCAGCCG CCGTGGCCGA AGCCGGCTCC
GGCAAGCGCC CCTACCGCAC CTGGGGCTGG CCGGTGACGC CGCTGTTGTT CGTGCTGCTG
TCGCTGTGGA TGGCCGCGCA CCTGGTTATC AACCAGCCCG GCCCCACGCT CATCGCCGGC
GGCGTCACCC TGGGCTCGGG CCTGCTCGCC TACCTGCTGT GGAGCGCGTA CCGGCGCTCC
CAGACGCGCT GA
|
|---|
| Protein sequence | MSQKPPPPAE INASADARKL GLLAATAIVV ANMIGTGVFT STGFMVPNLE SGPILINWLL
GGVLALCGAA TYAELGTLMP RVGGEYVYLR EAYHPSVGFL SGWVSLFAGF SAPIAGAGLA
FGAYLHAIAP ALPAKGAALA LIIALTALHM ADVVWGSRIQ TGFTLLKVAL ILVFIGLGFG
VGEGDWSNLD SAVPDASSSV LAPAFWISLV YVSFSYSGWN AAAYVAGEIR DPQRVLPRAL
LLGTAIVTAL YLALNLLFLY AAPAEALAGK AEVGHVAAVA LFGERAGGWL STIIALALVS
AVSAMVMAGP RVYTAMAEDG LFFSFLAARN RRGAPLGSVA LQGALACILV MIASLRELIQ
YIGFTLSIIA ALTVLSVFVL RVRRPELARA AAAAVAEAGS GKRPYRTWGW PVTPLLFVLL
SLWMAAHLVI NQPGPTLIAG GVTLGSGLLA YLLWSAYRRS QTR
|
|---|
| |