Gene Hoch_1881 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_1881 
Symbol 
ID8544263 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp2590233 
End bp2591894 
Gene Length1662 bp 
Protein Length553 aa 
Translation table11 
GC content71% 
IMG OID646386586 
Productserine/threonine protein kinase with TPR repeats 
Protein accessionYP_003266321 
Protein GI262195112 
COG category[K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms 
COG ID[COG0515] Serine/threonine protein kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.211563 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.848912 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGTCGG CGCGGGTTCG CGATATCCTA GCGCCCGTGA GCGACGACCG CATCGGCAGC 
GAGCTCGACG GCCGCTATCG CATCCAGGAC AAGCTGGGCG CGGGCGCGAT GGGCGTCGTC
TACCGCGGCG AGCGCATCGG CCTGGGACGC AACGTCGCCA TCAAGTTCCT GCACGAGCAC
ATGGCGACCG ACGACGGCTT CCTCACCCGC TTCGCGGTCG AGGCTCAGGC CACCGGTCGG
CTCCAGCACC CCAACTGCGC CGCGGTCATC GACTTCGGCG TGGTCGAGCG CGAGCCCTAT
GTCGTCATGG ACCTGGTCGC CGGCCAACCG CTGCGCGACC TGCTCGACGA CGAGCGGCTC
TCGGCCGGGC GCGCGCTCGG CATCATGCGC CAGATCCTGG CCGGCCTGGC GCACGCCCAC
GAGCAGGGCA TCACTCACCG CGATATCAAG CCCGACAACA TCATGGTCGA GAGCGGGGTC
GCGTTTGGCG ACCAGGTGTG CATCCTCGAC TTCGGGCTGG CCAAAGTGCG CGAGTCGGCC
ACCGGGCTCA CCGTCGGCAT GGTCGTGGGC ACGCCCAACT ACATGGCGCC CGAGCAGACC
CTGGCCCAGC CCGTGGACGA GCGCACCGAC GTCTACGCCG CCGGTATCGT GCTGTTCGAG
ATGCTCACCG GCGAGAAGCC CTTCCGCGCC GACACCACCC CCGAGATCCT GCGCATGCAG
CGCGAGACCC CGCCGCCGCG CCTGGCCTCC TTTGCCGGCG AGGGCGTGTT TTCGGACGAG
CTGGAGTACG TCGTCGCCCG GGCGCTGGCC AAGGCGCCCG CGCAGCGCTT CCACTCCGCC
ACCGCCTTCG CCCAGGCGCT CGACGAGGTG CCCGAGATGG CGGCGCGAGC GGCGACGCCG
ACCCCGCTGC CGGTCGCGCT CGAGCCCACC GCGCCGCGCC AGACGCCCAT CCCCGGGCAG
TCCCATGTCT CGGTATCGGC GCCCACCGCC CTGGTCGACG CCGCCGCCAG CGACGCCTCG
CGCCTGCATC CGCGCCAGCC CACCTCGAAT CAGGCCGCCC ACGCGCCCGG CAACCGCGGC
GCGATACCGG GCAAGCGCTG GATGCTCATC GGCGGCGGCG GCCTGCTGGC CCTGATCGTC
CTCGCGCTGG CCATCACCTC GGCCTCGGAT GCGCCCGCGA CCGACGACGG TACTGCGTCT
CTGGTCGATC CGTCCGAAAT CGAAATCGAA GCGCCGAGCG GAACCGAGCA GCTCGAGGAG
AAACTCGAGG AAAAGCTCGC CGAGGCGCGC GCGCTCACGG CCACCGAGCG CACCACCGAG
GCCCGCGCCC TGCTCGAGAA GCTGCGCGGA GAGCATCGCG AGGTCGCCGA GGTCCACTAC
TTGCTCGGAC AGGTGTACTT CGAAACCCTG TGGGTCAAGG ACGGCCTGGC CGCGTTCGAA
GACGCCATCG AATTGAACCC GGCGTACAGC CGGGATCCCG CGTTTATCGA CAGCGTGGTC
TACGGCCTGG CCAACGACCG CTACCACAAA GCGGTCGCCC ACTTCCTCAC TCGCCGCGTC
GGCGCCGCGG CCCGGCCCGC GGTCGCCGAG ATGGCCGAGA ACTATCACCG GCGCGAGGTC
CGCACCCGCG CCAGCCGTCT GCTGCGCCGT CTGCCCAAGT GA
 
Protein sequence
MSSARVRDIL APVSDDRIGS ELDGRYRIQD KLGAGAMGVV YRGERIGLGR NVAIKFLHEH 
MATDDGFLTR FAVEAQATGR LQHPNCAAVI DFGVVEREPY VVMDLVAGQP LRDLLDDERL
SAGRALGIMR QILAGLAHAH EQGITHRDIK PDNIMVESGV AFGDQVCILD FGLAKVRESA
TGLTVGMVVG TPNYMAPEQT LAQPVDERTD VYAAGIVLFE MLTGEKPFRA DTTPEILRMQ
RETPPPRLAS FAGEGVFSDE LEYVVARALA KAPAQRFHSA TAFAQALDEV PEMAARAATP
TPLPVALEPT APRQTPIPGQ SHVSVSAPTA LVDAAASDAS RLHPRQPTSN QAAHAPGNRG
AIPGKRWMLI GGGGLLALIV LALAITSASD APATDDGTAS LVDPSEIEIE APSGTEQLEE
KLEEKLAEAR ALTATERTTE ARALLEKLRG EHREVAEVHY LLGQVYFETL WVKDGLAAFE
DAIELNPAYS RDPAFIDSVV YGLANDRYHK AVAHFLTRRV GAAARPAVAE MAENYHRREV
RTRASRLLRR LPK