Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_1456 |
Symbol | |
ID | 8543838 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | + |
Start bp | 1972876 |
End bp | 1974747 |
Gene Length | 1872 bp |
Protein Length | 623 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 646386167 |
Product | sigma54 specific transcriptional regulator, Fis family |
Protein accession | YP_003265902 |
Protein GI | 262194693 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.80149 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCAGCT CTCCGGTCGA CAATTCGCGT ACAGTGGCCG GCACGACGCT CGGGGACGCC ACGGCGGCCG TGGGTCGGGT CGGCGCGCCG CAACACAGGG CCTTTCTGGC GGTGTATTCC GACGCCGCGG ACAGCCGCAC GCGCATGGTG GCGCTGCCGG ACGGGGTCGA GGTGGTGTTC GGCCGCTCGC GCGCGTGCGC CGTGCACGTG GACAGCGAGC GGGTGTCGCG CCACCACGCG CGCCTGGTGC GCCGCGGCGG CGAGCTGATG ATCGAGGATC TGGGCAGCCG CAACGGCACC CGGGTCAACG GCGAGCGCAT CGCCGAGGCC ACGGCGCTGG GCTCGGGCGA CGAGATCGCG ATCGGCCCGG TCACGGCCGT GGTCGGGGTG ACCTCGGGGC TGGAGCGCCG CCACGACATC GCCGAGGCCG CGGAGCTGGA TGCGCGCCTG GCCGCGGAAG CCGACCGCGG GCAGCGCTAT CAGCGCTCGT TCGCGCTGGT GATGATGCAG CTCCAGGGCT CGGACGAGGC CATCGATGAG GCGCTCGACC GGCTGGTGGC GCGCGTGCGG CCGATGGATA CGCTGGCCGA GTACAGCCCG AGCGAGTACG CGGTGCTGGT GCCCGAGACC GACGCGGCGA CGGGGATGGA CGCGGCCCGC GAGCTGCTGC GCACGGCCCG CGAGCAGCAC CTCGACTCGC TGCAAGCGCG GGCGCCGGTG CATGTGCGCG CGGGCCTGGC GGTGTTTCCG CGCCACGCCA GCCAGGCCGG CGAGCTCTTG TCGCGGGCCC AGGGCGCGCT GCGGCGGGCG CTGGCCGAGG ACGTCGACGA ACCTGTGGTG GCGGCCGGCG AGGAGCCGGC GCCCAGCGAT GACGAGCTGG TCATCCGCGA TCCGCAGATG CAGCGGGTGC ACGCGCTGGT GCGCAAGGTC GCCGATACCA ACATCACGGT GCTGATCCTG GGCGAGACCG GGGTCGGCAA GGAGGTGGTG GCCGAGGCCG TGCACCGCAG CGGCGGGCGT CAGCAGCGGC CTTTCGTGCG TCTCAACTGC GCTTCGATTC CGGGCAATCT GCTCGAGAGC GAGCTGTTCG GCCACGTCAA GGGCGCGTTC ACGGGCGCCG ATCGCCAGCA CACGGGCTAC TTCGAGGCGG CCAGCGGCGG GACCTTGTTC CTCGACGAGA TCGGCGAGAT GCCGGCCGCG CTGCAGGCCA AGCTGCTGCG CGTGCTCGAG CAGCGGCGCA TCACGCGCGT GGGCGATACC CGCGAGATCG CGGTCGATAC CCGCGTGGTC TGCGCGACCC ACCGCGACCT CGAGGACGAG GTGCGCCAGG GCCGCTTTCG CGAGGATCTG TACTTCCGCA TCAGCGTGTT CACGGTGCTG GTGCCGCCGC TGCGCGACCG GGTGTCCGAA ATCGCCCCGC TGGCGCACTG GTTCGCGCGG CGGGCGGCGC GCGAGCAGGG CGGGGCGGCG CCGCGGCTCT CGGATGAGGC GCTGGCCGTG CTCGAGGGTC ACCAGTGGCC GGGCAACGTG CGCGAGCTGC GCAACGCGGT CGAGCGCGCG TGCGTGCTGC AGGAGGCGGG CGTGATCCTG CCCGAGCATC TGCCCGAGCG CCTGCGTGAT GCGCGCGCGC CAGCCGGGCC GGGCGCGCTC GCCGGTGCCA ACACCAGCGC CGCCAGCGCC GCAGACGGAC CACCGGCCGA GGTCGATGTC CGCGAGTACA TCGCCACGGT CGAACGCGAC GCCATCGTCG CCGCGCTCGA GGAATGCGGC GGCAATCAGA CCCACGCCGC GCGCCGCCTG GGCATGTCGC GGCGCTCGCT GATCTACAAG CTCGAGAAGT ACGGGCTCAA GAAGAAGCCC GGGCAGCGCT GA
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Protein sequence | MSSSPVDNSR TVAGTTLGDA TAAVGRVGAP QHRAFLAVYS DAADSRTRMV ALPDGVEVVF GRSRACAVHV DSERVSRHHA RLVRRGGELM IEDLGSRNGT RVNGERIAEA TALGSGDEIA IGPVTAVVGV TSGLERRHDI AEAAELDARL AAEADRGQRY QRSFALVMMQ LQGSDEAIDE ALDRLVARVR PMDTLAEYSP SEYAVLVPET DAATGMDAAR ELLRTAREQH LDSLQARAPV HVRAGLAVFP RHASQAGELL SRAQGALRRA LAEDVDEPVV AAGEEPAPSD DELVIRDPQM QRVHALVRKV ADTNITVLIL GETGVGKEVV AEAVHRSGGR QQRPFVRLNC ASIPGNLLES ELFGHVKGAF TGADRQHTGY FEAASGGTLF LDEIGEMPAA LQAKLLRVLE QRRITRVGDT REIAVDTRVV CATHRDLEDE VRQGRFREDL YFRISVFTVL VPPLRDRVSE IAPLAHWFAR RAAREQGGAA PRLSDEALAV LEGHQWPGNV RELRNAVERA CVLQEAGVIL PEHLPERLRD ARAPAGPGAL AGANTSAASA ADGPPAEVDV REYIATVERD AIVAALEECG GNQTHAARRL GMSRRSLIYK LEKYGLKKKP GQR
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