| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_1262 |
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| Symbol | |
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| ID | 8543644 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | - |
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| Start bp | 1658947 |
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| End bp | 1663236 |
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| Gene Length | 4290 bp |
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| Protein Length | 1429 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 646385980 |
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| Product | Tetratricopeptide TPR_4 |
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| Protein accession | YP_003265715 |
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| Protein GI | 262194506 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.803703 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0826044 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGACT CTCAATTCGG GGCTTCCCCC CCGTCATCCG TCGTCGACCT GAGCGCCCAG
GCCGATGACG CGCTGCTGGT CGTTTGGGGG CGACAGCCGG GCCGCCGTCC GCGCGCGGTG
ACAGCCGCCG TGTGCGCGCG GATCGACGCC TTGGCCGAGG CCGTGACGGA GGCGGAGACC
ACCCGCGACC CCGAGGCCGT GGAGCGGACG CGCGGGGCGC TGGGTCGCGC GCTGTACGAG
GTGCTCGACG GCCCCGAGCG CGCGCTGGCG CAGCGCTGCC AGGACATCGC GGCTCGCGGC
GCTCGCCGTC TGGCTCTGGT GATTCGCCTG CGCAGCGCTG CGGTCCACGA GCGCGCGGCG
CTGGCCCGGC ATCCGTGCGT CCGCTGGCGC TGGGAGCTGC TCGCCGACGC GCACGGTCCC
CTCGCCACCC GGCGCGGGGG CGTGGCGATC AGCGTACAGC TCGGCGACCA GAGCGTCGCG
GCGCCGGTCG CGCTGCCGCA CGGAGGGCTG CGGATTCTGT TCATGGCGTC GTCGCCGCGC
GGTGTGCAGC CGGTGCTCGA CTACGAGCGC GAGGAGGAGC ACGTGCTCCG CGCGGTCGCC
CCGTTCGTAA AGGACGGCCG CGCCCGGCTG CGCGTCGTCG AACAGGGCAG CCTCGAGTCG
CTCGAGCGCT GTTTGCTCGG GCGCGCGTAC GATATCGTCC ACCTCAGCGG CCACGGCGAG
CTCACCCCAG CGGGGCCGCG CCTGCTCATG GAAGACAACG TCGGCGGCCG CTGCGACGTG
GGGCCGCAGC AGCTCCTCGA GGTGCTGCGC CGCGCCCACG ACCTGCCCGC CCTGGTCATG
ATCTCGGCGT GCTATTCGGG CGGCAGCCGC AACGGCATCC CCAGCCTGGC CGCGCAGCTC
GTGGCCGGCG GCATCCCGAC CGTGGTCGGC TGGGTCCAGC CCGTGCGCGA CGATCTCGCG
ACCGAGGCCG CCGGCGATAT CTACCAGCGT CTGTGCACCG GCAAGACCGT GGCGCAAGCG
GTGTCCTTTG CCCGCCAGCG GCTCCACGAT ACCGATCAAA AGGGCCTCCC CTCGGTCCCG
CCGACGCATA CCTGGGGCAC GCTCCAGCTC CTCACCGACG CGGCGTCCGA TATCCACCTC
GACGCCCAGC GGCCGCCGCT GAGCGACGAG CCCGCCGGCA GCGACGAGGC GTACACCTAC
CTGAGCGAGG GCCGCGTGCG CGTGCTCGAG CGCGGCTTCG TCGGTCGCCG CCGCGAACTG
CAGCGTCTGC TCTTCATCCT CATGCACGGC AAGGATGGCG AGGGCGAGCG CTGCGCGGGC
GCGATCATCC TGGGCATGAA GGGCGTGGGC AAGTCGTGCC TGGCCGCGCG CGCTGTGCAG
CGCCTGGCCC AGGGGCTGGC GGATCCGAGC GAACTCGGAC AGGTGGTCCT GCACGGCGCG
CTGGACGAAT TCACCGTGCT CGAGCAGTTC GAGATGCAGG CCATCCGCTG GGGGGACCGC
GACGCCGAGG ACATCCTGAG CGACGCGCGC GAGCCGCTGC CGCGTCGCCT GCGGCGGCTG
CTCGCCGGGC GCTGGCGCAC GCGGCGGCTG GTCATCGTGC TCGACAACTT CGAGCACAAC
CTCACGCCGC GCGCCGAGGG CGACGCGCTG CTCCACCCCG AGGTCGCCGC GCTGCTCGAC
GCGCTGGTGC CCGCGTGCCG TACCGGCCAC GCCAAGCTGC TGGTGACCAC CACGGCCAGC
TTCGAACTCC CCGCCTCGGC GCGCCGCTCT CTGCCCGTGA TCCGGCTGGG GCCGTTCGAG
CCCTCGTCGC TGCGCAAGCT GTGGAATCGC AGCCGGCACG ACGAACCCGG CGCAGACCAA
GCTCGCAGCG CCGGCGCCTC ATCGACCGGG TCCGCGGCGC AGCTCGACGA ACCGCAGTGG
ATGGCGATGT GCGACCGCCT GGGTCGCAAC CCGCGCGTCA TCGACTGGGC GCGCTCGCTG
CTCTCCGGCA CCGTACCGGC CACGGTCGAA ATCCTGGCCT CGAGCGCCGG GCTGACGCTG
TCGTGGCAGG CCGGCGACCT GCCGTCCGCG GACGCCGAGA CGCAGCTCCG GGGCATCTAC
CTGCATCACC TCTCCTACCA GCACGTGCTC ACGCTGGTGA GCGTCGATGC GCGTCGCCTC
GTCAAGCGCG CGCGCGTCTT CGAGGTAGCC GTGCCCAAGC GCGCCTTCGC GGGTCTGTGC
GCGGGCGTCG ACGTCGACCT CGACGCCCAT CTGCCCGCGC TGCAAAACCT CGGTCTGCTC
GAGGCGGGCG AGCTGGACGG CGTCCCCGCC TATCGCGTGA GCCCGCTCGT CGAGCCGTTC
CTCGACGTGC CCGGCCCGAG CCGATGGCAC GAGGTCGCGG CCGAGTTCTG GGAGGAGGAA
GGCCGCCGCG ACGACACCTC CGAGTGCATG CAGTGGGCCT GGGAGCACTC GCTGGCCGCG
GGTCGCCAGG TGAGGGCGGA TCGCACGGGC TGGCGCTTGC ACCAACGCCT CCTCCGCGCC
GGCAGCCACC ACAAGAGCCA ATCGCTGGCC GAGCGGCACC TGGCCGTGTT CCCGTTCTCC
GCCGTCGGCC ACGCGTGGCT GGGAATCGCC GTCGAGCGCA GCGGCGAGCC GCTCCACGGC
TGGAGCCATT ATCGCCGCGC CGAGTCCCTG GCGGAAACCG TCGGTTGCCA GGGCGTATCC
CGCGCGGAGC TCTTGCGCAC GGGCGGCGAA ATCCTCCGCG GACTCGGCCG CTACGTCGAG
GCGCGGGCAC GGCTGGAGCA GGCGGTCGAA CTCGACGAGC ACAGCGAGAC GCCCGATAGC
GCAAGCCTCG CGTCCTCGCT GCTGGGGCTG GCGCGGGTGC TGCATGCTCA GGGCGAATTC
GAGAGCGCGC GCGTGCAGCT CGAGCGCTCG CTGGTGCTGC ATACCAACAC CCACGGCACG
GTCGATCATC CGCACGTGAC CGACACCCTG TACGAACTCG CGCAAATCCT GCGCAGCCAG
GGCGATCTCG ACGGCGCGCG CGATCGTCTG GAGCGAGCGC TGCGCAAGTA TATCGCCCGC
TACGGCACCG ACGAACACGT CCGCGTGGTC GGCGTGCTGC ACGCGCTGGC GGGCGTCCGG
CTGCGCCAGG GCGACCTCGA CGGCTCGCAC TCGCTGCTCG AGCGCTCGCT CGCGCTCACC
CGATCGCTGC ACGGCTCCGA CGTCCATCCC CTGATCGCGC GAGCGCTGCA CGAGCTGGGC
CGCGTGCGCT TCGCCCAGGG CCGGCTGGTA AGAGGGCGCG AGTGCCTGGA GCGCGCGCTC
GACTTGAATC TCGAGCTGTA CCGCACCTAC GAGCACCCGG ATGTGGCCAG CGTCTTGTAC
GAACTCGGCC GATGCCTGCA CGTCCAGGGC GAACTCGACA GCGCCCGCGA GCACCTCGAG
CGCTCGCTGC GCATCAGCCA GTCCCTGTAT CGCGGCAAGC AGCATCCACA CGTGGCGGGG
GCGCTGCACG GGCTGGGACT GGTGCTCTGT GCCCTGGGCG AACTGCACGG CGCGCGCGCG
CACCTGGAGC GCGCGCTCGA GATCGGGACC GCCTTGCACG GCACCGATCT CCACTTTCGC
ATAGCGGAGA CCCTGCACGA GCTGGCGCGC GTGCTGGGCG CACAGGGTGA CGCCGCGGGC
GCCCGCGAAC GCTTCGAACG GGTGCTGGCC ATCTGCGCCG CGATCTACGA AACCGATCAC
CACCCGCAGG TGGCCAGCTC TCTCTACGAG CTCGGCCGCG TGCTGTGCAT GCAGGGAGAG
TTCGTCGGCG CCAGCCAGCG CCTCGAACGC TCGCTGGCGA TCAGCACTGC GCTCTACGGC
ACCGAGGCGC ACATGCACGT CGCCGGTGCG CTGCACGAGC TCGGGCGCGT GCGGCACTTC
CAGGGCGATC TACGCGCTGC GCTCGACCAC CTGGGGCGCG CGCAGGCGCT CAACACCGCC
GTGTACGGCA CCGAGCAGCA CCTGCACATC GCGGAGAATC TGTACGAGCA AGGCAGGGTG
TACGAAACAC AGGACCAACG ACGCAGCGCT CGCGAGCGCT ACGCACAGGC GCTGCGGATC
GTCAAATCGT GCCTCGGCAC GCGCGAACAC CGTCTGGCCG CCGAGATCGA GCTGGGCCTC
GGCCTGTGCT TGCTCCAGGA TGGCAGCAGA GACGAGGCCC AGCCGCTGCT TTCGCACGCC
GCGACGCTCC TGGCGGCTCA GTCGCCGCAG CACCCGAGGC TCGAAGAGCT GCGCCAGCGC
TTCCCGGAAG CGCTGAACCG CGCCTCGTAA
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| Protein sequence | MIDSQFGASP PSSVVDLSAQ ADDALLVVWG RQPGRRPRAV TAAVCARIDA LAEAVTEAET
TRDPEAVERT RGALGRALYE VLDGPERALA QRCQDIAARG ARRLALVIRL RSAAVHERAA
LARHPCVRWR WELLADAHGP LATRRGGVAI SVQLGDQSVA APVALPHGGL RILFMASSPR
GVQPVLDYER EEEHVLRAVA PFVKDGRARL RVVEQGSLES LERCLLGRAY DIVHLSGHGE
LTPAGPRLLM EDNVGGRCDV GPQQLLEVLR RAHDLPALVM ISACYSGGSR NGIPSLAAQL
VAGGIPTVVG WVQPVRDDLA TEAAGDIYQR LCTGKTVAQA VSFARQRLHD TDQKGLPSVP
PTHTWGTLQL LTDAASDIHL DAQRPPLSDE PAGSDEAYTY LSEGRVRVLE RGFVGRRREL
QRLLFILMHG KDGEGERCAG AIILGMKGVG KSCLAARAVQ RLAQGLADPS ELGQVVLHGA
LDEFTVLEQF EMQAIRWGDR DAEDILSDAR EPLPRRLRRL LAGRWRTRRL VIVLDNFEHN
LTPRAEGDAL LHPEVAALLD ALVPACRTGH AKLLVTTTAS FELPASARRS LPVIRLGPFE
PSSLRKLWNR SRHDEPGADQ ARSAGASSTG SAAQLDEPQW MAMCDRLGRN PRVIDWARSL
LSGTVPATVE ILASSAGLTL SWQAGDLPSA DAETQLRGIY LHHLSYQHVL TLVSVDARRL
VKRARVFEVA VPKRAFAGLC AGVDVDLDAH LPALQNLGLL EAGELDGVPA YRVSPLVEPF
LDVPGPSRWH EVAAEFWEEE GRRDDTSECM QWAWEHSLAA GRQVRADRTG WRLHQRLLRA
GSHHKSQSLA ERHLAVFPFS AVGHAWLGIA VERSGEPLHG WSHYRRAESL AETVGCQGVS
RAELLRTGGE ILRGLGRYVE ARARLEQAVE LDEHSETPDS ASLASSLLGL ARVLHAQGEF
ESARVQLERS LVLHTNTHGT VDHPHVTDTL YELAQILRSQ GDLDGARDRL ERALRKYIAR
YGTDEHVRVV GVLHALAGVR LRQGDLDGSH SLLERSLALT RSLHGSDVHP LIARALHELG
RVRFAQGRLV RGRECLERAL DLNLELYRTY EHPDVASVLY ELGRCLHVQG ELDSAREHLE
RSLRISQSLY RGKQHPHVAG ALHGLGLVLC ALGELHGARA HLERALEIGT ALHGTDLHFR
IAETLHELAR VLGAQGDAAG ARERFERVLA ICAAIYETDH HPQVASSLYE LGRVLCMQGE
FVGASQRLER SLAISTALYG TEAHMHVAGA LHELGRVRHF QGDLRAALDH LGRAQALNTA
VYGTEQHLHI AENLYEQGRV YETQDQRRSA RERYAQALRI VKSCLGTREH RLAAEIELGL
GLCLLQDGSR DEAQPLLSHA ATLLAAQSPQ HPRLEELRQR FPEALNRAS
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