Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_0186 |
Symbol | |
ID | 8542565 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | + |
Start bp | 283130 |
End bp | 285001 |
Gene Length | 1872 bp |
Protein Length | 623 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 646384982 |
Product | ABC transporter related protein |
Protein accession | YP_003264720 |
Protein GI | 262193511 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | [TIGR02204] ABC transporter, permease/ATP-binding protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.437337 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTGGCGC CCATGTCCGA GACCAACCAC GAGCAAGCGC CCGCCGACGC AGCCAGCGCG GACGCCGACA GCGGCGCGGG CGGCGACAGC GGCGCCTATA CCGAGAGCGG CGCGCCCAAG CGCGGCGGCA TCAAGCGCCT GAGCGAGCTC GGCCGCCTCG TCGGCCTGCT CCGCCACTAC CGCGGCCGCT TCTACCTGGC CACCATCGGC CTGCTCATCA GCTCGGGCCT GGGCCTGGTC TACCCGCAGG CCGCCAAGTA CGCCATCGAC ACCGGCATCT CGGGCGGCTC GGTCGAGGAG CTCAACGCCG TGCTCGGCTG GTTGCTGGTG GCGTTTACCG TCCAGGCGCT GATGATCTGG GTGCGCCACT ATCTGATGAG CTGGCTCGGC GAGCGCGCGG TCGCCGACCT GCGCAGCATG GTCTTCGACC GGCTGCTGAC GCTGTCGCTG GGCTGGTTCC ACGAGCGCCG CACGGGCGAG CTCGTCGGCC GCCTGGCCAG CGACGTCACC GTGGTCGAGA GCGTGGTCGG CAGCGACGTG AGCATCGCGC TGCGCAACCT GGTGCAGCTC GTCGGTGGCG TGGTGCTATT GTTCGTGGTC AACGCCGAGC TGACCCTGTA CATCCTCATG GTGGTGCCGC CCATGACCGT GGGCGTGGTG TTTTTCGGAC GCATCATCCG GCGCATGAGC AAGGCCGTGC AGGACCGCCT GGCCGAGGTC AGCGGCCAGG TGCAAGAGTC GATCGGCGCC ATCCAGACCG TGCAGGCCTT TGTCCGCGAG AAGCGTGAGA GCGAGGTCTA TCGCGGCGGC GTCGAGGCCG CCTTCGAGCA GGCGCTGTCG CTGGCGCGCT GGCGCGCGAC CTTCTTCTCG ACCGTGTCGC TCACCTTCTA CTTCGCCGTC GCCGCCATCA TCTGGATCGC CGGACGCGCC GTGGTCCGCG GCGAGATCTC GCCCGGCGAC CTGACCGCGT TTTTGCTCTA CACCGGCATC GTGGCCTCCT CCCTGGGCAG CATCGCCAGC CTGTGGGGCT CGCTGCAGCG CGCCGTCGGC GCCACCGAGC GGCTCTTCGC CATCATCGAC ACCGTCCCCG ATATCGCCGA CCACGAGGTC GCCACCGCGC TGCCCAGCGG CGGCGGGGCC GTGCACTTCG AGCGCGTGGC CTTCCACTAC CCCGCACGTC CCGACAAGCC GGTGCTCAGC GAAATCGACC TGCGCATCGC GCCCGGCGAG ACCGTCGCCC TGGTCGGCCC CTCGGGCGCC GGCAAGTCGA CCTTGACCTC GCTCTTGTTC CGCTTTTTCG ACCCGGTGTC CGGGCGCGTC ACCTTCGAGG GCGAAGACCT GCGCGCGCTG CGGCTCTCGG AGCTGCGCAA GGCCATGGCC CTGGTCGCCC AGGAGCCGGT GCTGTTCTCC GGCAGCGTGC GCCAGAACAT CGCCTACGGC GACGACACCG CCACCCAGGA GGACATCGAG GCGGCCGCGC GCGACGCCCA CGCCCACACC TTCATCCTGG GCATGCCCGA GGGCTACGAC ACGCCCATCG GCGAGCGCGG CGTCAAGCTC TCGGGCGGCC AGCGCCAGCG TTTGGCCATC GCCCGCGCCA TCCTGGCCAA CCCGCGCGTG CTGGTGCTCG ACGAGGCCAC GAGCAACCTC GACTCCGAGA GCGAGGCGCT GGTGCAGGAG GCGCTGGCCC GGCTCATGGA CGGCCGCACC ACCCTGGTCA TCGCCCACCG CCTGAGCACC GTGCGCGACG CCGACCGCAT CGTGGTGCTC GACGACGGCA AGATCGTCGA GACCGGCCCG CACGAGGCGC TGATGGCCCA GGACGGTGTC TATCGCCGCC TGGTCGAGCA TCAGCTCCTG GCCGAGACCT GA
|
Protein sequence | MLAPMSETNH EQAPADAASA DADSGAGGDS GAYTESGAPK RGGIKRLSEL GRLVGLLRHY RGRFYLATIG LLISSGLGLV YPQAAKYAID TGISGGSVEE LNAVLGWLLV AFTVQALMIW VRHYLMSWLG ERAVADLRSM VFDRLLTLSL GWFHERRTGE LVGRLASDVT VVESVVGSDV SIALRNLVQL VGGVVLLFVV NAELTLYILM VVPPMTVGVV FFGRIIRRMS KAVQDRLAEV SGQVQESIGA IQTVQAFVRE KRESEVYRGG VEAAFEQALS LARWRATFFS TVSLTFYFAV AAIIWIAGRA VVRGEISPGD LTAFLLYTGI VASSLGSIAS LWGSLQRAVG ATERLFAIID TVPDIADHEV ATALPSGGGA VHFERVAFHY PARPDKPVLS EIDLRIAPGE TVALVGPSGA GKSTLTSLLF RFFDPVSGRV TFEGEDLRAL RLSELRKAMA LVAQEPVLFS GSVRQNIAYG DDTATQEDIE AAARDAHAHT FILGMPEGYD TPIGERGVKL SGGQRQRLAI ARAILANPRV LVLDEATSNL DSESEALVQE ALARLMDGRT TLVIAHRLST VRDADRIVVL DDGKIVETGP HEALMAQDGV YRRLVEHQLL AET
|
| |