| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_0050 |
|---|
| Symbol | |
|---|
| ID | 8542420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 80380 |
|---|
| End bp | 81927 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 646384838 |
|---|
| Product | two component, sigma54 specific, transcriptional regulator, Fis family |
|---|
| Protein accession | YP_003264585 |
|---|
| Protein GI | 262193376 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0532507 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAGC ACGCCGACTA TCCCATCCTC GTCGTCGACG ACGAGCAGGA CAACCTCGAC
GCCTTCCGCT TCAACTTCAA GCGCGCGTTC CGCCTGCTGT GCGCCTCGAG CGGCGAAGAG
GCGCTCGAGA TCCTGCGCGA CAACGAGGTC GCCGTGATCG TCACCGATCA GCGCATGCCG
CGCATGACCG GGCTCGAGCT GCTGCTCAAA GCCGCCGAGA TCCAGCCCGA CGCGGTCGGC
ATCATCCTCA CCGCGTACAC CGATCTCGAC GTCTTGGTCG ACGCCATCAA CCTGGGCCAG
ATCTATCGCT ACGTCACCAA GCCGTGGGAG GCCAAAGAGC TGCGCGGCAT CCTCACCCAC
GCCCTCGAGC GCTACGCCCT GCTGCGCGAA AACCAGCGCC TCATGGCCCA GCTCCGCGAG
TACACGGGCT ACCTCAATCA AGAGATCCAC GGCGCCTTTG ACTTCGGCAA CATCATCGGC
GACAGCGCCG CGCTGGGCGA GGTGCTGTCC AAGGTCGAGC AGGTAGCGCC GACCAACTCC
ACCGTGCTGC TGCGCGGCGA GACCGGCACC GGCAAAGAGC TGGTCGCCCA CGCCATCCAC
ATCAACTCGT CGCGCGAGAA CCAGCCCTTC GTGCGCGTCA ACTGCGCCGC GCTCGCGCCC
GGCGTGCTCG AGTCCGAGCT CTTCGGCCAC GAGAAGGGCG CGTTCACGGG CGCGGTGGCG
CAGCGCCCGG GCCGCTTCGA GCTGGCCGAC GGCGGCACCC TGTTCCTCGA CGAGTGCGGC
GACCTGCCCA TGGAAGTGCA GATCAAGCTG CTGCGCGCGC TGCAGGAGCG CGAGTTCGAG
CGCGTCGGCG GCACCCAGAC CATCAAAGTC GACGTCCGCG TGATCTCGGC GACCAACCGC
GACCTCGAGG CCATGATCGA AGCCGGCAGC TTCCGCGAGG ACCTCTACTA CCGGCTCAAT
GTCTTTCCCA TCCACCTGCC GCCGCTGCGC GACCGACTCG AGGACCTGCC CGCCCTGGTC
GCGCACTTCA TCGCCAAGTT CGCGCGCAGC GGCATGACGC GGACCCCGGG CGTGCGCGGC
GCGGCGCTCG ACAAGCTGCG TTCGTACACC TGGCCGGGAA ACGTGCGCGA GCTCGAGAAC
ATCATCGAGC GGGCGATGAT TCTCGCGCGC GGGCGGGAGC TCGACGCCGA CCACCTGGAT
TTCGGACGTC GGGCCCAAAA CGCTACGCCA GTGAGCGGCA CGCCGAGCGT GATCAGCGAG
ACCGCGAGCC ACAGCCCGCC CCTGATCGGC GACGAGTCCA AGCCGCTGGC CGAGCGCCTG
CTCGACAGCG AGCGCCGCGA GATCATCGCC GCGGTCGAAA AATCCAACAA CAACATCGCC
AGCGCGGCAC GCATGCTCGG CATCAACCGC TCGACCCTGT ACTACCGCAT GCGCAAACAC
GGTCTCGAAC ATCTGCTGCC GACCAAGGTC GGCCTCGGCG GCAGCGCGGG CGGCGGCTCC
TCGCCGACGC GCGATAGCTC CGGCGCGGAC AGCACCGACG CCGACTGA
|
|---|
| Protein sequence | MTQHADYPIL VVDDEQDNLD AFRFNFKRAF RLLCASSGEE ALEILRDNEV AVIVTDQRMP
RMTGLELLLK AAEIQPDAVG IILTAYTDLD VLVDAINLGQ IYRYVTKPWE AKELRGILTH
ALERYALLRE NQRLMAQLRE YTGYLNQEIH GAFDFGNIIG DSAALGEVLS KVEQVAPTNS
TVLLRGETGT GKELVAHAIH INSSRENQPF VRVNCAALAP GVLESELFGH EKGAFTGAVA
QRPGRFELAD GGTLFLDECG DLPMEVQIKL LRALQEREFE RVGGTQTIKV DVRVISATNR
DLEAMIEAGS FREDLYYRLN VFPIHLPPLR DRLEDLPALV AHFIAKFARS GMTRTPGVRG
AALDKLRSYT WPGNVRELEN IIERAMILAR GRELDADHLD FGRRAQNATP VSGTPSVISE
TASHSPPLIG DESKPLAERL LDSERREIIA AVEKSNNNIA SAARMLGINR STLYYRMRKH
GLEHLLPTKV GLGGSAGGGS SPTRDSSGAD STDAD
|
|---|
| |