Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_0013 |
Symbol | |
ID | 8542383 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | - |
Start bp | 15541 |
End bp | 17559 |
Gene Length | 2019 bp |
Protein Length | 672 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 646384801 |
Product | excinuclease ABC, B subunit |
Protein accession | YP_003264548 |
Protein GI | 262193339 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAGACC GACTCTTTGA AATCGTTTCG CCGTTCACAC CTACCGGGGA CCAACCCGAG GCCATTCGCC AGCTCATCGA GGGACTCGGG CGCGGCGACC GGCACCAGGT CCTGCTCGGC ATCACCGGCT CGGGCAAGAC CTTCTCGGTC GCCAACGTCA TCGCCGAGAC CGGTCGCCCC GCGCTGATCA TCGCGCCCAA CAAGATCTTG GCAGCGCAGC TCTACGGCGA GTTCAAAGAG CTGTTTCCCA AACACGCCGT TCACTACTTC GTCAGTTACT ACGACTACTA CCAGCCAGAA GCCTACGTCC CGACGACCGA TACATACATC GAGAAAGACT CCCTCATCAA CGAGGAGATC GATCGCATGC GGCACGCGGC CACCTACGCG CTGCTGTCGC GCCAGGATGT CATCATCGTG GCCTCGGTGT CGTGCATCTA CGGTATCGGC GCGCGCGAGA TGTACGCGTC GATGACCTGC GACATCGAGT CCGGTACCGA GGTCGCGCGC GACGATGTCT TGCGCCGTCT GGTCGAGTTG CAGTACGAGC GCAACGACGT CGACTTCCAC CGCGGCACCT TTCGCGTGCG CGGCGACGTG GTCGAGGTAT TCCCGGCCTA CGAGGCCGAT ACCGCCATCC GCATCGAGTG GTGGGGCGAC GACGTCGAAT CCATCTCCGA GATCGACCCG CTGCGCGGCA AGGTCAAGCG CTCGCTCGGA CACGTGTCGA TCTTCCCGGC CTCGCACTTC GTCACGCCCA GCGACCAGCT CCGGCGCGCG ATCGAGGGCA TCCGCGTGGA GCTGCGCGAG CGGCTCGAGG AGCTGTCGCA GCAGAACAAG CTGGTCGAGC GCCAGCGGCT CGAGCAGCGC ACCATGTACG ATCTCGAGTG TCTCGAGCAG ATGGGATTTT GCTCCGGTAT CGAAAACTAT TCGCGCCACC TCACCGGACG CGATTCCGGC CTGCCGCCGC CCACGCTCAT CGACTACTTC CCCGAGGAGT TCATCCTCTT CATCGACGAA TCGCACCAGA CCGTGCCGCA GCTCCAGGCC ATGTACCGGG GCGATCGCTC GCGCAAGCAG ACCCTGGTCG ACTTCGGCTT CCGGCTGCCC AGCGCCATCG ACAACCGGCC GCTGCGCTTC GATGAATTCA ACGAGCGCGC GCGCCAGTAT ATCTATATCT CGGCGACGCC GGCCGACTAC GAACTCGAGC AGTCGCAGGG CGTCATCGTC GAGCAGATCA TCCGCCCGAC CGGTCTGCTC GACCCCGAGA TCGAGGTCCG CCCGGTCGGC GAGCAAGTCG ATGACCTGTT GTCCGAAATC CGTCTGCGCA TCGAGCGGCG CGAGCGCGTG CTGGTCACCA CGCTGACCAA ACGCATGGCC GAGGACCTCA CCGAGTACTA CGCCGACCTC GACGTGAAAG TGCGCTACCT GCACTCCGAT GTCGACACCC TCGAGCGCAT CGAGATCATC CGCGACCTGC GCCGCGGCGT GTTCGACGTG CTGGTCGGAA TCAACCTCCT GCGCGAGGGC CTCGACATCC CCGAGGTGTC GCTGGTCGCC ATTCTCGACG CCGACAAAGA GGGCTTCCTG CGTTCGACCC GCTCGCTCAT CCAGACCATC GGACGCGCGG CCCGAAACGT CAACGGCAGG GTGCTGCTGT ACGCCGACCG CATCACCAAG TCGATGCGCG ACGCCATCGA CGAGACCGAG CGTCGCCGCG CGCTGCAGGG CGAGTACAAC CAGACCCACG GCATCGTGCC GCGCTCGACC ACGCGCGCCA TCCTCGATAT TCAGCCGACC AACGCAGACG GCAGCCTCAC GCGCGCGCCG CTCACCGAGG CGGTGCCCAC CGATGTTCTC GACGAGCTGT CCGTCGACAA CGCCGCCGAG CTGCGCAAGG CCATCGAGAA GCTGCGCGGC GAGATGCGCG CGGCCGCGGC CGAGCTGGAT TTCGAACGCG CGGCCAAGCT CCGCGATCGC GCGCGCGAGC TCGAATCTCT CGAGCTCGCC GTCGGCTGA
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Protein sequence | MEDRLFEIVS PFTPTGDQPE AIRQLIEGLG RGDRHQVLLG ITGSGKTFSV ANVIAETGRP ALIIAPNKIL AAQLYGEFKE LFPKHAVHYF VSYYDYYQPE AYVPTTDTYI EKDSLINEEI DRMRHAATYA LLSRQDVIIV ASVSCIYGIG AREMYASMTC DIESGTEVAR DDVLRRLVEL QYERNDVDFH RGTFRVRGDV VEVFPAYEAD TAIRIEWWGD DVESISEIDP LRGKVKRSLG HVSIFPASHF VTPSDQLRRA IEGIRVELRE RLEELSQQNK LVERQRLEQR TMYDLECLEQ MGFCSGIENY SRHLTGRDSG LPPPTLIDYF PEEFILFIDE SHQTVPQLQA MYRGDRSRKQ TLVDFGFRLP SAIDNRPLRF DEFNERARQY IYISATPADY ELEQSQGVIV EQIIRPTGLL DPEIEVRPVG EQVDDLLSEI RLRIERRERV LVTTLTKRMA EDLTEYYADL DVKVRYLHSD VDTLERIEII RDLRRGVFDV LVGINLLREG LDIPEVSLVA ILDADKEGFL RSTRSLIQTI GRAARNVNGR VLLYADRITK SMRDAIDETE RRRALQGEYN QTHGIVPRST TRAILDIQPT NADGSLTRAP LTEAVPTDVL DELSVDNAAE LRKAIEKLRG EMRAAAAELD FERAAKLRDR ARELESLELA VG
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