Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hneap_2194 |
Symbol | |
ID | 8535358 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halothiobacillus neapolitanus c2 |
Kingdom | Bacteria |
Replicon accession | NC_013422 |
Strand | + |
Start bp | 2358576 |
End bp | 2359679 |
Gene Length | 1104 bp |
Protein Length | 367 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 646384575 |
Product | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
Protein accession | YP_003264057 |
Protein GI | 261856774 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCACG TCCCCTCGCC CACGATTCGC CGACTGTCCC GCAAGATATT CGTCGGCAAT GTGCCGATTG GTGGTGATGC GCCTGTGGCC GTGCAAAGCA TGACCAATAC CGAAACCTGT GATGTGGCGG CCACGGTGGC GCAAATTCAG GCGTTGCAGA AAGCCGGAGC CGATCTGGTG CGCGTATCTG TGCCCACCAT GGAGGCCGCC GAAGCCTTTG GAGCAATCCG CAAGCAGGTC AGCCTTCCGC TCGTTACCGA CATCCATTTC GATTACCGTA TCGCATTGCG CGTGGCCGAT CTCGGTGCCG ATTGCCTGCG AATCAATCCC GGCAACATCG GTCGGGAAGA TCGCGTGCGT GCCGTGATCG ATTGCGCGCG CGACAAAGGC ATTCCACTGC GCATCGGTGT CAACGCCGGC TCGCTGGAAA AAGACCTGCA ACAGAAATAC GGCGAGCCCA CCCCGGAAGC GATGGTCGAG TCGGCCATGC GCCATATCGA TATTCTTGAT CGACTCGATT ACCCCGATTT CAAGGTATCG CTCAAGGCAT CGGACGTCTG GATGACCGTG CTCGCGTACC GTCAACTGGC CGGGCAGATC GAACAACCGC TGCATTTGGG TATTACCGAA GCGGGTGGAT TGCGTTCCGG AGCCGTCAAA TCGGCCGTCG GGCTGGGCAT GTTGCTGGCC GAGGGCATTG GTGACACGAT CCGCATCTCG CTGGCCGCCG ACCCGGTCGA AGAAGTCAAG GTGGGTTGGG ATATTCTCAA ATCCCTGCGC CTGCGCAACC GCGGTATCAA CCTCATCGCC TGCCCTTCCT GCTCACGGCA GGAATTCGAT GTCATCAAGG CCGTCAATGC GCTCGAAGGG CGGATTGAAG ACATCGACAC CGCGATGGAT GTTGCCGTGA TCGGCTGCGT GGTCAACGGG CCGGGCGAAG CACGCGAAGC GGCCATTGGC TTGACCGGCG GGCAACCCAA TCTGTTGTAC ATCAACGGCA AACCGGCAGG GAAACTGACC GAAGCCGAAC TGGTCGATGG TGTAGAGCGC GCAATTCGTG AACGGATCGC CGCCAACAAA GCCACGGAAT CCAGCCCTAC CTAA
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Protein sequence | MSHVPSPTIR RLSRKIFVGN VPIGGDAPVA VQSMTNTETC DVAATVAQIQ ALQKAGADLV RVSVPTMEAA EAFGAIRKQV SLPLVTDIHF DYRIALRVAD LGADCLRINP GNIGREDRVR AVIDCARDKG IPLRIGVNAG SLEKDLQQKY GEPTPEAMVE SAMRHIDILD RLDYPDFKVS LKASDVWMTV LAYRQLAGQI EQPLHLGITE AGGLRSGAVK SAVGLGMLLA EGIGDTIRIS LAADPVEEVK VGWDILKSLR LRNRGINLIA CPSCSRQEFD VIKAVNALEG RIEDIDTAMD VAVIGCVVNG PGEAREAAIG LTGGQPNLLY INGKPAGKLT EAELVDGVER AIRERIAANK ATESSPT
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