Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hneap_2184 |
Symbol | |
ID | 8535348 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halothiobacillus neapolitanus c2 |
Kingdom | Bacteria |
Replicon accession | NC_013422 |
Strand | + |
Start bp | 2348588 |
End bp | 2350450 |
Gene Length | 1863 bp |
Protein Length | 620 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 646384565 |
Product | protein-export membrane protein SecD |
Protein accession | YP_003264047 |
Protein GI | 261856764 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCGTT ATCCGTGGTG GAAAAACCTG CTGATTATCC TGGTGCTTTT GCTGGGCATT TTCTTCGCAT TACCCAATAT ATACGGTGAG AATCCGGCAC TGCAAATTTC CAAGCGCAAT GCCGTCATGG ATCAGGCCGC CGTTGATAAG GCAGTGGCCG CACTCAAGGC CGCCAACATC CCCGTCAAAA GCGCCCGCCT CGAAGACAAG GACGGCTTGA TCCAGTTCAC CTCCACAGAT GCGCAGCTCA AAGCGGTCAA TGTCGTGCGC GAAGCACTGG GTGAAAATTA TCCGGTAGCA CTAAACCTCG CCCCAGCAGC ACCACGCTGG ATGCAGAACC TAGGCGCCAA GCCAATGTAT TTGGGGCTCG ATTTGCGCGG TGGTGTGCAC TTTTTGATGC AAATTGACAT GCAGGCCGCC ATCAAGACCG CGCTGGAGCG GCGGGTTGAT GGCATGCGCG GCGACCTGCG TCAGGCAAAC ATCCGCTATG TGGCCGCCGA TGTTGAAAAT GGCGACGAAA TCGCCCTGCG ATTCCCGGAC GCCGCGGCCC GCGATGCCGC ACTCAAATCC ATGGCTGGCA ACTACCCCGA GCTGAAATTC AGTACCGATG AACGCAACGG TCAGCCTTTC CTTACAGCCA AATTCACGGA TGTCGGCGCC ACCGCCGAGC GCAAGGCAGC CGTGGACCAG AACATCACCA CTCTGCGCAA TCGCGTCAAC GAACTGGGGG TCGCCGAACC GCTGATTCAG CAGCAGGGCG ATGACCGAAT CGTGGTCGAA CTGCCCGGCA TTCAGGACAC GGTTCGCGCC AAGGAGATCA TTGGTGCTAC CGCGACACTG GAATTCCGAC TTGTCTCCGG TACACCGACT GATTGGGTCG ATGCCGAGCA GAGTGGCCGC GTGCCGCCGG ATGCGCGGCT CTATCACGAA AAAGATGGCC GACCAGTTCT GCTCAAGCGC CAGGTCATCG TGACCGGCGA CCGCATTACG GGCGCTTCAT CCGGCTTCGA CCAACGCTCG GGCTCACCGG CCGTATTCGT GAATCTGGAT GGCCAAGGTG CGCGCCGAAT GGCCGATATT ACCGGTCAGA ACATCGGCAA GCAGATGGGC GTGGTGTTCA TCGAGCATCG TACCGAAACG AAGATAGTTG ATGGCAAGCC AGTCAAAGAC AAAAAGGTCA TTCAGCAGGT GATCAACGTC GCCACCATTC AGGATCAGCT CGCCAATCGT TTCCAGATTA CGGGCCTCGA CTCGCCAGAA GAAGCGCGCG ACCTAGCTCT GCTGTTGCGG GCCGGTGCGC TGCGTGCGCC GATGGATATC GTGGAAGAAC GCACCGTAGG CCCAAGCTTG GGTGCGCAAA ACATCCAGTC GGGCGTCAAT GCGTCGATTT TGGGCTTCGC ACTGGTCGCC GTATTCATGC TGATTTACTA CCGCGTGTTC GGCGTGACTG CAATCGTTGC CTTGGGTGTC AACCTGATCC TGATCGTCGC CGTGCTCTCG ATGTTGCAGG CCACGCTGAC CTTGCCCGGT ATTGCGGGGA TGGTGCTGAC GCTGGGTATC GCGGTGGATG CCAACGTGCT GATCAACGAG CGCATTCGTG AAGAACTGCG CAACGGCCTA ACGCCCCATG CCGCCATCAA GGCGGGGTAT GAGCGCGCCT TCGCCACCAT TATCGATTCG CACGTAACTA CCCTGCTCGC CGCCATCGTG CTGTTTGCGC TGGGAGCGGG CGCGGTGAAG GGATTTGCCG TCACGTTGAC AATCGGGATT CTGGCCTCGC TCTTTACCGC AATCATGGTC ACGCGTGCAC TGGTGAACCT GATTTACGGT CGCCGCGTAC GTCTGAACAA GATATCTATT TAA
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Protein sequence | MNRYPWWKNL LIILVLLLGI FFALPNIYGE NPALQISKRN AVMDQAAVDK AVAALKAANI PVKSARLEDK DGLIQFTSTD AQLKAVNVVR EALGENYPVA LNLAPAAPRW MQNLGAKPMY LGLDLRGGVH FLMQIDMQAA IKTALERRVD GMRGDLRQAN IRYVAADVEN GDEIALRFPD AAARDAALKS MAGNYPELKF STDERNGQPF LTAKFTDVGA TAERKAAVDQ NITTLRNRVN ELGVAEPLIQ QQGDDRIVVE LPGIQDTVRA KEIIGATATL EFRLVSGTPT DWVDAEQSGR VPPDARLYHE KDGRPVLLKR QVIVTGDRIT GASSGFDQRS GSPAVFVNLD GQGARRMADI TGQNIGKQMG VVFIEHRTET KIVDGKPVKD KKVIQQVINV ATIQDQLANR FQITGLDSPE EARDLALLLR AGALRAPMDI VEERTVGPSL GAQNIQSGVN ASILGFALVA VFMLIYYRVF GVTAIVALGV NLILIVAVLS MLQATLTLPG IAGMVLTLGI AVDANVLINE RIREELRNGL TPHAAIKAGY ERAFATIIDS HVTTLLAAIV LFALGAGAVK GFAVTLTIGI LASLFTAIMV TRALVNLIYG RRVRLNKISI
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