Gene Hneap_1927 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHneap_1927 
Symbol 
ID8535085 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothiobacillus neapolitanus c2 
KingdomBacteria 
Replicon accessionNC_013422 
Strand
Start bp2060851 
End bp2062635 
Gene Length1785 bp 
Protein Length594 aa 
Translation table11 
GC content59% 
IMG OID646384308 
ProductDEAD/DEAH box helicase domain protein 
Protein accessionYP_003263796 
Protein GI261856513 
COG category[J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.118281 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGAAG AAAACACCAT CCTATTTTCC GATTTTGCCC TTGCTGCACC CTTGCTGCGA 
TCGGTCGAAG AACTGGGCTA CGAAAGCCCA TCACCCATCC AAGCCAAAAG CATTCCCGTC
CTGCTGGAAG GCAAAGACGT GCTGGGCATG GCGCAAACCG GCACCGGCAA AACCGGTGCG
TTCGCCCTGC CTTTGCTGAG CCGGATCGAC ATCAATCTGC GCGCACCCCA ATTGTTGGTT
CTGGCGCCAA CACGTGAACT GGCAATCCAG GTCGCCGAAG CCATGCAGGC CTACGCCCGC
CACTTGCCTG ATTTCCATGT TCTGCCCGTC TACGGCGGAC AAGCGATGGA ACCTCAGCTG
CGCGGCCTGA AACGCGGCGT ACACGTCGTG GTCGGCACAC CGGGTCGCAT CCAGGATCAC
ATCAAGCGCG GCACGCTCAA ACTCAATCAA ATCCAGGCTG TTGTACTGGA TGAAGCCGAC
GAAATGCTGC GCATGGGCTT TATCGATGAC GTCGATGAAA TCTTGAGCAA AACACCGGCC
AACCGTCAGG TCGCACTGTT CTCCGCCACC ATGCCGGATC AGATTCGCCG CATTGCCCAA
CGGCATCTGC GCAACCCGGT CGAAATTGCG ATCAAATCCA GCACCTCGAC CGTCAAGGCC
ATCAACCAGC GGTATTGGGC CGTCAGCGGC ATGCACAAAT TGGATGCGCT GACCCGCATT
CTGGAAGTCG AAGAATTTGA CGCGGTGATC ATTTTCGTGC GCACCAAAGT GGCCACCACC
GAACTGGCCG AAAAACTGGA AGCGCGCGGC TATGCTGCCT CTCCGTTGAA TGGCGACATG
AATCAGGCCA TGCGTGAAAA GGCAATCGAT CGCCTCAAGC GCGGATCACT CGATATCATC
ATCGCGACCG ACGTGGCCGC ACGCGGTATT GATGTGGCGC GTGTCAGCCA TGTCGTGAAC
TACGACATCC CTCTGGATAC CGAATCGTAT GTGCACCGCA TCGGCCGTAC CGGTCGTGCC
GGTCGTTCCG GCGAGGCCAT CCTGTTCGTC GCCCCACGCG AAAAGCGCAT GCTGGGCGCC
ATCGAACGCG CTACCGGGCA ATTGATCACC CCCATGCGCC TGCCGAGCCA GAGCGATATC
GCGGACAAAC GCTCTGCCGC GTTCAAGAAC CAGATCAGCG AAGCGATGGA ATCTCAGGAT
CTGGCCTTCT TCGAGACCCT GATCGAGGAA TACCAGTCCG AACACGACGT CGGCCTGTCG
GAAATCGCAG CCGCGTTGGC CTATTTGGCA CAAAAGGACC GTCCTCTGCT GCCGGCCGAA
ATCAAGGAAA CGGCGCAAGT CGGCTTTGGC GACCGCCAGG ATCGCGGCCA AGGTCGTGAT
CAGGATCGTC GCGACGAGCC CCGCCGTCCC CGTCAGAACG ATGACATGGC CCGTGTGAAA
TACCGGATCG AAATCGGCCA CGAGCATGGC GTCCAACCGA AGAACATCGT CGGCGCACTT
GCCAACGAAG CCGGCATCGA CAGCAAATAT ATCGGCGCGA TTCGCATTTT CGACAGCCAC
AGCACCGTTG ACTTGCCCGA AGGCATGCCG AACGAAGTCT TTACCCAGCT CAAACGTCTG
CATGTATTGG GCATACCGCT CGAGATCAGC GAAGCTGCCC CGGGAGACAG TGAAGGCGAG
CGCAGCGGCA ACCGCCGCCC ACCGGCCGGC CCGCGCAAAT TCGGCCCTCG TGGTGGTGGT
GATTCCTTCG GCGGCAAACC CCGTCGCTCG AAACCACGCA GCTAA
 
Protein sequence
MSEENTILFS DFALAAPLLR SVEELGYESP SPIQAKSIPV LLEGKDVLGM AQTGTGKTGA 
FALPLLSRID INLRAPQLLV LAPTRELAIQ VAEAMQAYAR HLPDFHVLPV YGGQAMEPQL
RGLKRGVHVV VGTPGRIQDH IKRGTLKLNQ IQAVVLDEAD EMLRMGFIDD VDEILSKTPA
NRQVALFSAT MPDQIRRIAQ RHLRNPVEIA IKSSTSTVKA INQRYWAVSG MHKLDALTRI
LEVEEFDAVI IFVRTKVATT ELAEKLEARG YAASPLNGDM NQAMREKAID RLKRGSLDII
IATDVAARGI DVARVSHVVN YDIPLDTESY VHRIGRTGRA GRSGEAILFV APREKRMLGA
IERATGQLIT PMRLPSQSDI ADKRSAAFKN QISEAMESQD LAFFETLIEE YQSEHDVGLS
EIAAALAYLA QKDRPLLPAE IKETAQVGFG DRQDRGQGRD QDRRDEPRRP RQNDDMARVK
YRIEIGHEHG VQPKNIVGAL ANEAGIDSKY IGAIRIFDSH STVDLPEGMP NEVFTQLKRL
HVLGIPLEIS EAAPGDSEGE RSGNRRPPAG PRKFGPRGGG DSFGGKPRRS KPRS