| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1666 |
|---|
| Symbol | |
|---|
| ID | 8534824 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | + |
|---|
| Start bp | 1792655 |
|---|
| End bp | 1793671 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 646384051 |
|---|
| Product | P-type conjugative transfer protein TrbG |
|---|
| Protein accession | YP_003263539 |
|---|
| Protein GI | 261856256 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
|---|
| TIGRFAM ID | [TIGR02775] P-type conjugative transfer protein TrbG |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAC CCATTTTGAT TCGCGGCCGC ATGTTATCGC CACTCGCAAG GGCTGTGGCT
ATCGGCATTG CCTTGTCCGT CACTTCGGTG GCGTTCGCCG AACCAGTCGT GCCCGCGATT
GAGCACGGCG GCGCTGAGAC ACGACCATCT CAGGCGAATA CGGTGGCGAT GCCGAGACAC
TTAAACCTCA CCCCGATTCC AATCCCTCAC CCCGCCGTGA TGGCCAGCAC GATGAGTGAG
CGGTTTTTGC AAAACCCCAA GGCCATTCCA GCTCAAGGTA ATAACGGGCA AGTCACTTTT
GTGTACGGTC AAAGCGTGCC CACCATCACC TGTGCTCCGC TGCGGATTTG CGACATTAGC
CTTGAGCCCG GCGAGGTGAT TAATGGGGCG CCGCAAATGG GCGATACCGT GCGTTGGCAA
GTGGCACCCG CCGTTTCCGG TGAAGGGGCT GACAAAATCA CGCATGTGAT TGTTAAACCC
ACCGATGTTG GGCTGGACAC CAATATGGTG ATCCCCACCA ATCGGAGAAC TTATTACCTG
CGCTTGGTTT CCGACAAGAA GAATTATGTG ACCAGCATTG GCTTCACCTA CCCAGATACG
CAAGCCAAGC AATGGGCGGC GTATCAAGCG CAGCAAGCCA AGAAAGCCGC TGTTGTTGTA
GATAAGCCTG CCGTTTCTGT CGATCAGCTC GACTTCAATT ACACGGTTAA AAGCGTGAAG
GGTATGGGCA TGGTGCCGGT ACGCATTTTC AACGATGGTC AGAAGGTATT TATCCAGATG
CCAACGGATA TGCAGGAAGC ACCTGCTCTG TTTATCGTCG GGCAGGATGG CAAGGATCAA
CTCGTGAATT ACCGCCTGCG TGATGGTTAT TTTATCGTCG ATCGATTGTT TCATCAGGCC
GCGCTGATTG CAGGCGTAGG CGACGATCAA TCCCGTATCA CGATCACGCA TCATGACCAT
CGTGTTATCG AGAAAGCCAA ATCGGACAAA AATTGGTTTC TGGATTATGA GGATTAA
|
|---|
| Protein sequence | MNKPILIRGR MLSPLARAVA IGIALSVTSV AFAEPVVPAI EHGGAETRPS QANTVAMPRH
LNLTPIPIPH PAVMASTMSE RFLQNPKAIP AQGNNGQVTF VYGQSVPTIT CAPLRICDIS
LEPGEVINGA PQMGDTVRWQ VAPAVSGEGA DKITHVIVKP TDVGLDTNMV IPTNRRTYYL
RLVSDKKNYV TSIGFTYPDT QAKQWAAYQA QQAKKAAVVV DKPAVSVDQL DFNYTVKSVK
GMGMVPVRIF NDGQKVFIQM PTDMQEAPAL FIVGQDGKDQ LVNYRLRDGY FIVDRLFHQA
ALIAGVGDDQ SRITITHHDH RVIEKAKSDK NWFLDYED
|
|---|
| |