| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1612 |
|---|
| Symbol | |
|---|
| ID | 8534770 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | - |
|---|
| Start bp | 1750495 |
|---|
| End bp | 1752537 |
|---|
| Gene Length | 2043 bp |
|---|
| Protein Length | 680 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 646383999 |
|---|
| Product | DNA topoisomerase III |
|---|
| Protein accession | YP_003263487 |
|---|
| Protein GI | 261856204 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGTGT ATTTATGTGA AAAGCCGTCA CAGGCTCGGG ATATTGCCGC TGTTTTGGGT
ATTCAGTCCA AAGATAAAAG CTCAATCACA ACCGCCGATG GCGTGGTGAC CTGGGCATTC
GGCCATCTGC TCGAACAAGC GCCGCCCGAT GCCTACGATG ACTCACTCAA GCGCTGGGCG
CTGGCTTCAT TGCCGATCGC GCCGACTCAG TGGAAAGTCG AGGTGAAATC GAGCGCCAAG
GATCAATTTA AAGCCATCGC CACCTTGCTT AAAAGGGCCA CTGAGGTGGT GATTGCCACC
GATGCAGATC GTGAAGGCGA AATGATTGCG CGCGAGCTGA TGGCGTTTGT GGGCTTCAAG
GGCAAAGTTC AGCGATTGTG GTTATCTGCC CTCGATGCTG CTTCGGTCAA AAAAGCCTTG
GCAGCTTTGA AGCCGAGTGC TGAAACCGCC GGTTTGTATC AATCGGCCCT TGGTCGGTCG
CGGGCGGATT GGCTGGTGGG GATGAACCTC ACGCGGGCAT TTACCTTGGC GGGGTGTAGC
CAGGGCGGGG AGGGTGTGCG CAGCGTGGGG CGAGTACAAA CTCCAACCTT GAGCCTTGTT
GTCGCGCGGG ATCGTCAGAT TGAGCATTTC AAGCCCGTGC CTTATTTCGA ACTGTTCGGG
TTCTTTGAAG CAGGGCAGTC ATTCAGTACC AAATGGAAAG TGCCCGAAGG GGCTGGGGAT
GACGCAGGGC GCTGTGTCGA CCAATCAATC GTGGATGCCG TCGCCAGCAA AATCACCGGC
AAAACGGGCA CGGTAAGCCA GTATGAAACC AAGCGCATTA GTGAAAATCC GCCGCTGCCA
TTCAGCCTAT CTACTCTGCA AAAAACCTGC TCGGCCAAGT TTGGTTTAGG TGCACAAGAA
GTGCTGGATA TTGCCCAGGC ACTGTACGAA ACCCACAAGG CCACCACCTA TCCCCGATCG
GATTGCAATT TTCTTCCCGA GGAGCAATTC CAAGAGGCAT CTTCCATCGT AACGGCACTG
GCCAAGTCAG ATACCGAAGT GCAAGGGATC GTTGATTTGC TAGATTTCAG CCGGAAAAGC
CCCGCCTGGA ATACCAAAAA AATCACGGCG CACCATGCCA TCATCCCCAC GCAAACGCCG
CCAAATATGG ATGCGATGAG TGACAACGAG CGCAGAGTCT ATGAACTGAT TCGTCGCCAA
TATCTCGCGC AATTCTTACC CAACTATGAA TATGACCGGA CCCAGATTGG CATCAGCATC
GAGGGCGAGT TATTTCAGAC CACCGGCAAA ATTGACCAAG TGACCGGCTG GCGCGTGCTG
TTCGGCAAAG CGGATGCCAG TGACGATGAG CCCGATGACG AGGTGCAAAC CTTGCCCGCC
TTGACGCAAG GCCAAACGCT GCCGCTGAGT CACACCGAAA TTGCCGCCAA ACAAACCAAA
CCACCCTCAC GCTACACCGA AGGCACCTTG ATTGATGCCA TGCAAACGAT TGGGAAAAAC
ATCACCGATC CACGGCTGAA GGCCATTCTC AAAGAAAACT CGGGCATCGG CACCGAAGCC
ACGCGCGCGG GCATTATTGC CAACCTGATT GAACGCGGTT TCATCACCAA AAAAGGCAAA
CAGGTCATCA GCAGTGATGT CGGCAGACAA TTGATTGATG CACTGCCCGA TTCCGTCAAA
AGCCCTGCAC TCACTGCCCT GTGGGAGCAG TCACTTGAAG AAATTGCCGA GGGCAAGCGT
GAATTGGCGG GATTTGAGGC CGATGTCGTC AAATTCATCA CCGCGATTAT CGACCAGATC
AAAAAGCAAC ACGCTGATGC ACCAGCACCA ACGCGGCCGA CGGCGGATTG CCCGACCTGC
AAGGCGCAAG GCCAAGCTGA AAAAGTCTAT TCCATCAAAA AACAATGCCA CTACTGGCAC
TGCAAAGCCT GTAACCAATG GTTTGATGAC GCCGCCGGAA AGCCCGTGCC GAAAGCAGCG
GCAAGTAGCT CGAAAACAAA GCCCGCACCA CGCAAAAAAA CTACGGCGAG AAAAGCAAAA
TGA
|
|---|
| Protein sequence | MRVYLCEKPS QARDIAAVLG IQSKDKSSIT TADGVVTWAF GHLLEQAPPD AYDDSLKRWA
LASLPIAPTQ WKVEVKSSAK DQFKAIATLL KRATEVVIAT DADREGEMIA RELMAFVGFK
GKVQRLWLSA LDAASVKKAL AALKPSAETA GLYQSALGRS RADWLVGMNL TRAFTLAGCS
QGGEGVRSVG RVQTPTLSLV VARDRQIEHF KPVPYFELFG FFEAGQSFST KWKVPEGAGD
DAGRCVDQSI VDAVASKITG KTGTVSQYET KRISENPPLP FSLSTLQKTC SAKFGLGAQE
VLDIAQALYE THKATTYPRS DCNFLPEEQF QEASSIVTAL AKSDTEVQGI VDLLDFSRKS
PAWNTKKITA HHAIIPTQTP PNMDAMSDNE RRVYELIRRQ YLAQFLPNYE YDRTQIGISI
EGELFQTTGK IDQVTGWRVL FGKADASDDE PDDEVQTLPA LTQGQTLPLS HTEIAAKQTK
PPSRYTEGTL IDAMQTIGKN ITDPRLKAIL KENSGIGTEA TRAGIIANLI ERGFITKKGK
QVISSDVGRQ LIDALPDSVK SPALTALWEQ SLEEIAEGKR ELAGFEADVV KFITAIIDQI
KKQHADAPAP TRPTADCPTC KAQGQAEKVY SIKKQCHYWH CKACNQWFDD AAGKPVPKAA
ASSSKTKPAP RKKTTARKAK
|
|---|
| |