| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1021 |
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| Symbol | |
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| ID | 8534168 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | - |
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| Start bp | 1105193 |
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| End bp | 1106779 |
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| Gene Length | 1587 bp |
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| Protein Length | 528 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 646383405 |
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| Product | outer membrane efflux protein |
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| Protein accession | YP_003262904 |
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| Protein GI | 261855621 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCGCAATC GGCCCGCAAT ATTTTCACCA GGCAACCACC CGCTCAGAGT CAAAAGCGCG
ATTTTGGGCT TGGCAATTGC ACTTGGCTTG TTTGGTTTTT CGAACGTTTA TGCGAATTCG
TTTGATGACC CGTTCGGGGT AAATGCGCGC CTGCCCGAGC ATCCAGGCGT AAAGGCCGCG
CAACGGGCGG ATTTTTATAC CATTTCAGCC CCAACGGCCG TTCAGAAGCA AAAGATGGTC
ACGGGGCACG AATATTCACT TGCCGAACTG AGCGCGCTCG CCCTGTCGAA CAATCCCCAG
ACCCATTCGG TATGGGCCAG TTTGCGTGCG CAAGCGGCCA GTGTGGGTAT CTCTGAAGCG
GCCTGGCTAC CCAAATTGAC GTTGAACGCC TCGGCGCAAC AATCTCAATC GACCACATCC
ACCGGTTTTA GTATCCCGAC TCAACGAATA TTCGCGCCTA ATCTGAGCTT GTCCTGGTTG
CTGTACGATT TCGGCCAGCG CGAAGCAGGG ATTGCAGCGG CAAAAGCCGG TCTTGTGGCC
GCACGATTTG CCAATGACCA AACCCTGCAA ACCGTCCTAT CCAGCGTCGC AAGTGCTTAT
TACCAATCGT TGGCTGATCA GGTACTGATC GAGGTCAACA AGCGATCAGT TGAAACGGCC
CAAAAAGCGC TGGATGCGGC ACAGGCCAGA TACCGCTCCG GGCAAGCCAC CGTCAGTGAT
CTGTATCAGG CAAAAGCCGC ACTGGCGCAG GCCGAGGGAA CGCTGGCGAC GGCCGAACAG
ACCCAACTCC AGAACGCGGG GGCGCTGGCC AGTGCCGTCG GCTTGCCTGT CGACACACAG
TTAAGACTCG CTCCTTTGCA AACCCGCATC GATCCCAAGC TCGATGCAAA TGTAAAATCA
CTGCTGCAAC AGGCGATTGC TCAAAATCCG AACTTGCAGA ATGCACAGGC ACAAGTAGCG
CAGGCCCGAG CCACGCTTGA TCAGACCGAA AGAGCCGGCT TGCCCAGTAT TTCACTGGGC
GCCAATCAGG GTCTGCGCTT TCAGCAGAGC TTGGGACGGA CCCAAACCAA CAGCATCGGA
TTAACGCTCT CCGTGCCGCT ATTCACCGGT TTTGACCAGC ACTACCAAAC GGCTCAGGCG
CGCGCCAAAC TGGCAGAAGC CGAAGCCAAC CGCGACACAA CTTACCAATC GACCGAACTG
GCGGTATGGC AGGGTTATTA TGCCTTCCGT GGTGCAATGG TTGCCATTCC GAGTGCGCGC
GCTCAGGTTG AAAACGCCAA CGAGGCGCTC AAGGCGGTGC AGGCCCAATA CAAGGTCGGT
TACGCCACAA TTCAGGATCT CTTGACAGCC CAGTCCACGC TGGCAACGGC TGAAGTCACA
CTCGCCCAGA ACGCCTTGAA CGCCTACACC GCGCTCGCCA AACTCGGCGC CGCCATCGGC
CAACTCGGCT CGCCCATGTT CTCGGAACAC AGCCTGCTTG ACCCGACGAC AGCGGCCGTC
AGCGATGGCG CAGCACCAAA TGATCATCTG CCCGATATCG TCCCGACATC TCATTTGTAT
GATCACAAGG AACAGTCTCA GCCATGA
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| Protein sequence | MRNRPAIFSP GNHPLRVKSA ILGLAIALGL FGFSNVYANS FDDPFGVNAR LPEHPGVKAA
QRADFYTISA PTAVQKQKMV TGHEYSLAEL SALALSNNPQ THSVWASLRA QAASVGISEA
AWLPKLTLNA SAQQSQSTTS TGFSIPTQRI FAPNLSLSWL LYDFGQREAG IAAAKAGLVA
ARFANDQTLQ TVLSSVASAY YQSLADQVLI EVNKRSVETA QKALDAAQAR YRSGQATVSD
LYQAKAALAQ AEGTLATAEQ TQLQNAGALA SAVGLPVDTQ LRLAPLQTRI DPKLDANVKS
LLQQAIAQNP NLQNAQAQVA QARATLDQTE RAGLPSISLG ANQGLRFQQS LGRTQTNSIG
LTLSVPLFTG FDQHYQTAQA RAKLAEAEAN RDTTYQSTEL AVWQGYYAFR GAMVAIPSAR
AQVENANEAL KAVQAQYKVG YATIQDLLTA QSTLATAEVT LAQNALNAYT ALAKLGAAIG
QLGSPMFSEH SLLDPTTAAV SDGAAPNDHL PDIVPTSHLY DHKEQSQP
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