| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_0743 |
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| Symbol | |
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| ID | 8533880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 804162 |
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| End bp | 806168 |
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| Gene Length | 2007 bp |
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| Protein Length | 668 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 646383129 |
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| Product | tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC |
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| Protein accession | YP_003262639 |
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| Protein GI | 261855356 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGGCGAA TTTTAGCAGC CCGGTCAGGT TCTGTTCTGT TGTTTGGCCC AATATCTGGC
TTTTTTGATC TTGCTATCGG GCGTTCGAAT GCACAACCCG CTGTTTGGTT TGATTTTATG
ACGATTTCTC CCTGCGCGAT TTCATGGGCC GACGTGCAAT GGCGCAGCGA TGGCAGTCCG
TACTCGCCCG ATTATGGCGA TATCTATTAC TCGGCGGCGG GTGGTCTGGC GGAGAAGAAG
GCCGTGTTTC TGGAAGGATG CGCCTTGCCC GCGCGATTTG CAGCCGGAAC GCCCGCGCAT
GTACTTGAAC TGGGTTTCGG TACGGGTTTG AGTTTTCTGA CGACTTGGGC TTCCTTTCTG
CAACACGCAC CGGAACCCAA TCCGACCCAT GGGTTAAAGC CAGATTTGTT GTTCTATTCG
ATCGAAAAGC ATCCGTGGTC ACGTGGCGAT TTCCTCAAGT TGGCCACGCG ATGGCCCGAA
TTGGCGCCGC TCGTGGTCGA GCTGGCAGAA CAATGGCCTG ATCCCGTGAC GGGATTTCAC
CGCCGATTCC TTTCCGGTGG TCGGGTTGTG CTGACACTGG TGTTCGGTGA TGTCGAGTGG
GCGTTAAGGC AACTCGATGC GCCGTTTCAT GCCTTTTATC TGGATGGATT CAGCCCGCGC
CTGAACGACG CCATGTGGTC GCCGCACATA TTCCGTGCCT TGGCTCGACT GGCCGCGGAT
GAGGCCAGAG TTGCCACCTA TTCATCGGCC AATGCCGTGG CCCAAGGGCT CACCGCCGCA
GGCTTTCTTG TTGAAAAAGT GCCCGGATTC GGCCTCAAAA AGCACCGTCT GGTGGCCGTA
CGGCGGCACA TGATGCGCAG TCGCAAACCT CGTCAGGAAA AACCGCCGAC ATCGGTTGTG
GTGATCGGCG CGGGGATTGC GGGCTTGACC ACGGCGTATG CCCTAGCCCG AAGGCAGGTT
GACGTAACCG TAATCGATGC CGCGGCCACG CTCGGCGATG GTGCTTCAGG CAACCCGGCG
GGTGTGCTGT CGCCCTTGTT GAGCCGGGAT TGCCATGCGG CCACTTTGCT GACCCAAATG
GGTTTGGGAT TCGCGCGGGA ACAGATCAAA CAGTTGCAGC AGGCGGAATT CAGCGTGCCC
GCCGCCTTTG ATGGCGTTGT GCAGCTTGCC CGTGACACCA TTCATGCCCA GCGGCAACAG
CAAATCGCCG ACGAGCAAAG CTACGCGCCG GAATTTGCGC AATGGCTCGA TTCGTCGGTC
TTGTCCGGTA AGGTGGGGAT AGAGGTCACG GAACCGGGAT GGCTTTTCCC TTCCGCCGGA
TGGGTGTCGC CACGCGACTG GCTAGCGGCC TTGCAGGCAC ACCCTGGGAT TTCCCTTCGT
AAGAACACGG ACGTTGCCGA TCTGCGCTTC GAGGATGGCC TCTGGTGTGG TTATTCGGTT
TCGGGCGAGG AGTTGTTTTC GTCGTCTTGT GTCGTGTTGG CGAATGCGGG GGCCGTTGCG
ACTCTTTTGC CGGAATTCGA ATCCGTGCTT ACGGCCTGTC GGGGGCAGGT AGATTGGATT
GACAGAAGCG ATCACCTTGG GCTTGAGCTT GCTCAAATGC CGCTAATGCG CGAGGGTTAC
ATGCTGGATT TGCCGGATGG TCGGCGGCTT TTCGGCGCCA GCTTCAAGCC GGGTGATCAG
GACTTGTCGT GGCGTTTTGA TGAGCGAATG GAAAATCAGG AGCGACTGGC TGCACTGTCC
GCGGATCTGG TTACGCCAAC AATTCAAGAT GATGCAGAAC ATCAGGGGCG CGTTTCGCTT
CGTGCAACAA GCCGGGATCG CTTGCCGATT GTCGGCGAGA TGCCCGGTCA ATCCGGATTG
ATGGTCAATA CCGGTCACGG ATCAAGGGGC TTGACCTGGT GCCCTCTGCT GGCGGAAGTG
TTGGCGGCTT CGTGTTGCGG TGAGCCAAAT CCCGTGCCGC GATCTTTACA ACTGGCTTTG
CGACCAGAAA GGTTGATTCA GGAATAG
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| Protein sequence | MGRILAARSG SVLLFGPISG FFDLAIGRSN AQPAVWFDFM TISPCAISWA DVQWRSDGSP
YSPDYGDIYY SAAGGLAEKK AVFLEGCALP ARFAAGTPAH VLELGFGTGL SFLTTWASFL
QHAPEPNPTH GLKPDLLFYS IEKHPWSRGD FLKLATRWPE LAPLVVELAE QWPDPVTGFH
RRFLSGGRVV LTLVFGDVEW ALRQLDAPFH AFYLDGFSPR LNDAMWSPHI FRALARLAAD
EARVATYSSA NAVAQGLTAA GFLVEKVPGF GLKKHRLVAV RRHMMRSRKP RQEKPPTSVV
VIGAGIAGLT TAYALARRQV DVTVIDAAAT LGDGASGNPA GVLSPLLSRD CHAATLLTQM
GLGFAREQIK QLQQAEFSVP AAFDGVVQLA RDTIHAQRQQ QIADEQSYAP EFAQWLDSSV
LSGKVGIEVT EPGWLFPSAG WVSPRDWLAA LQAHPGISLR KNTDVADLRF EDGLWCGYSV
SGEELFSSSC VVLANAGAVA TLLPEFESVL TACRGQVDWI DRSDHLGLEL AQMPLMREGY
MLDLPDGRRL FGASFKPGDQ DLSWRFDERM ENQERLAALS ADLVTPTIQD DAEHQGRVSL
RATSRDRLPI VGEMPGQSGL MVNTGHGSRG LTWCPLLAEV LAASCCGEPN PVPRSLQLAL
RPERLIQE
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