| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_0650 |
|---|
| Symbol | |
|---|
| ID | 8533786 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | - |
|---|
| Start bp | 702343 |
|---|
| End bp | 704835 |
|---|
| Gene Length | 2493 bp |
|---|
| Protein Length | 830 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 646383039 |
|---|
| Product | penicillin-binding protein 1B |
|---|
| Protein accession | YP_003262550 |
|---|
| Protein GI | 261855267 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
|---|
| TIGRFAM ID | [TIGR02071] penicillin-binding protein 1B |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGATG CTGTTAAACT GGTCACTAAT TATGGTTCTA GTGTATCAGT GTGGGTGAAC
TCGGTGGCGC AAACAAAAAA AACAGCTCGA CCAGCCCAAA AACCCCCAGC CCGCAAAGGT
TCTAACGGTA AAAAACCAGC CAACAACAGC GCTTCGAAGG GCGTTCGTGT GGGTCGTTTC
AGCCTGCGTG GTCTTTTCTG GCGCATCGTT ATTATCGCTG TACTGGTGCT CACTGCGCTG
ATGAGCATCT GGGCGTATTT TCTGAATCAA CGCGTCGTCG ATCGCTTTTC CGGCACGCTC
TGGAAGCTGC CCGCCACCGT TTATGCCGCG CCACAAGAAA TTTATGTCGG TCAACATCTC
TCACCCGGCG AACTGGTGGA CGAACTCACC AGTCTGCATT ATCGCGACCG AGACACACTC
ACCGAAACGG GAACATATGA TCGAGTCGGC AATGAAATCC GCCTGCACCG CAGGGCATTC
GATTTCCCGG ATGGCAACGA AACGGACAGG CAGATTCGGG TTCAATTCAT CGATAACCGG
GTCAAGGCAG TCAACGACGA CAAGGGCAAC AGCCTCGGTA TCATCCGCCT GGAACCGATG
ACGATCGGCC AACTCTACCC GGACATCAAT GAAGACCGCG TGCTGCTCAA TGTGGAACAG
GTACAGAAAG ACGCGCCGCT CCTGATCAAG ACGCTCATCA CGGTCGAAGA TCGGGATTTT
TATTATCATC ACGGCGTGGT GCCGAGCGCG GTCCTGCGCG CGCTGCTGGT CAATATTGTC
AGCGGTCATA AAGTGCAAGG CGGCAGCACC ATCACCCAGC AACTGGCCAA GAATCTGTTT
CTCACGCCCA AGCGCACCTA CAAGCGCAAG CTCGAAGAAA TGATCATGGC GCTGGAAATG
GAATGGCACT ACTCCAAGGA TAAAATCCTC GAAGGTTATT TGAACGAGGT GTACCTCGGT
CAGGACGGCA GCCGCGCCAT TCACGGTTTT GGCTTGGCCG CGCGCTATTA TTTCGGCCGG
CCGGTCGACG AACTGCGGCC CGAGGAAATC GCCCTGCTCG TCGGCATGGT CAAGGGCGCG
TCGTACTACA ATCCCCGTCG AAACCCTGAA CGCGCAAAGG ATCGTCGTGA CACCGTCATT
GATCTTATGG CCAACAACGG CCTGATCTCG GAAACCGAAG CGGGCGAACT CAAACAAAAG
CCACTGGGCG TACTCAAGGA AAAAGGCACG ACCTCGCCCC ATCCCGCGTT CCTGGATCTG
GTGCAACGGC AACTGTCGCA GCAATACAAC CCCGAAGACC TCAAAACCAA AGGGTTACGC
ATTTTCACCA CCATGCAGCC CCGTGTTCAG GCAGCGCTTG AGCACTCGGT CACAGCACTG
AATGCGATTG AAAAAGCCCG TCATTACAAG CCCGACTCCC TGGAGACCGC GGGCATCATC
ACCTCGATCG GTACCGGTGA AGTCGAAGCG TTGATCGGCG GGCGCAATCC AACCTATGAG
GGTTACAACC GCGCTTTGGA TGCCCAGCGA CAGATCGGCT CGCTGATCAA ACCCACCATT
TACCTGACAG CGCTCTCCGA TCCGGCTAAG TACTCACTGA TCACGCCACT GGACGACAGC
CCCTTGACCG TCGATCAGCC CGGCTCAAAA CCCTGGAAAC CGGAAAACTA CGACCGTAAA
TTCCTCGGCC CCACGCCGCT GTACACTGAT TTGGCCGAAT CGCGCAATGT GCCGAGTATC
CGTCTTGGCT TGAGCGTTGG CTTGGATAAT GTATCGGCCA TGTTGCACCG ACTGGGCGGA
CCAGACATCA AGCCGTTTTA TCCCTCGATG CTGCTCGGCT CGATGACGAT GAGTCCATTT
AATGTCGCAC AAATCTTCCA AACGCTCTCC TCAGACGGCT TTTACAGTCC GCTGCGCGCC
ATTCGCAGTG TGGTGGATGC CGAAGGCAAA CCGCTGACGC GTTACCCGCT GACCGTCACC
AAAGTGGCCG ATCCCGATGC GCTCTATCTG CTGCAATACG CCATGCAAGG TGTGGTGAAT
AACGGCACGG CACGCGCCTT GAACCGCACC ATTCCCCCGT CGGTGGGTGT AGCCGGCAAG
ACAGGTACCA CCAACGACAG CCGGGATGCC TGGTTCGCCG GCTTTACGGG CAATCGGGTC
GGGGTAATTT GGGTCGGTCG CGATGACGAC AAGCCCACCA GCCTGACCGG TGCCAGCGGT
GCATTGCCTT TATGGGCAGC GGCATTCAAA CCGCTCTACA ACAAGCCACG GGACATGACA
CCGCCCAAAG GCATCGATTT CGTCAATGTC GATGTGGCGC AGCAGGCGCG CGTTCCCAGC
CAGTGCCCCG GCATCCTGAT GCCATTTATG AGCGGTTTCG AACCCAAAAC CATTCTCGAT
TGCAACGGCA ACTCGACCGA CTCCGGGAAT ACCGATCGGG GCGGCGGGAC AAACGGCAAT
CCACTCAACC CGATTTTGAA TTTTTTCCGA TAA
|
|---|
| Protein sequence | MPDAVKLVTN YGSSVSVWVN SVAQTKKTAR PAQKPPARKG SNGKKPANNS ASKGVRVGRF
SLRGLFWRIV IIAVLVLTAL MSIWAYFLNQ RVVDRFSGTL WKLPATVYAA PQEIYVGQHL
SPGELVDELT SLHYRDRDTL TETGTYDRVG NEIRLHRRAF DFPDGNETDR QIRVQFIDNR
VKAVNDDKGN SLGIIRLEPM TIGQLYPDIN EDRVLLNVEQ VQKDAPLLIK TLITVEDRDF
YYHHGVVPSA VLRALLVNIV SGHKVQGGST ITQQLAKNLF LTPKRTYKRK LEEMIMALEM
EWHYSKDKIL EGYLNEVYLG QDGSRAIHGF GLAARYYFGR PVDELRPEEI ALLVGMVKGA
SYYNPRRNPE RAKDRRDTVI DLMANNGLIS ETEAGELKQK PLGVLKEKGT TSPHPAFLDL
VQRQLSQQYN PEDLKTKGLR IFTTMQPRVQ AALEHSVTAL NAIEKARHYK PDSLETAGII
TSIGTGEVEA LIGGRNPTYE GYNRALDAQR QIGSLIKPTI YLTALSDPAK YSLITPLDDS
PLTVDQPGSK PWKPENYDRK FLGPTPLYTD LAESRNVPSI RLGLSVGLDN VSAMLHRLGG
PDIKPFYPSM LLGSMTMSPF NVAQIFQTLS SDGFYSPLRA IRSVVDAEGK PLTRYPLTVT
KVADPDALYL LQYAMQGVVN NGTARALNRT IPPSVGVAGK TGTTNDSRDA WFAGFTGNRV
GVIWVGRDDD KPTSLTGASG ALPLWAAAFK PLYNKPRDMT PPKGIDFVNV DVAQQARVPS
QCPGILMPFM SGFEPKTILD CNGNSTDSGN TDRGGGTNGN PLNPILNFFR
|
|---|
| |