Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hneap_0163 |
Symbol | |
ID | 8533277 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halothiobacillus neapolitanus c2 |
Kingdom | Bacteria |
Replicon accession | NC_013422 |
Strand | + |
Start bp | 164040 |
End bp | 166097 |
Gene Length | 2058 bp |
Protein Length | 685 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 646382541 |
Product | DNA ligase, NAD-dependent |
Protein accession | YP_003262074 |
Protein GI | 261854791 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0316123 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGTCTT CGTTACCTGA CTTGTTCTCC GCGCCGTCCG AGGATGGCGA CCGCGCCCGT TTGCTTGCGC TGCGTGACGA AATCGAACGG CACAACTTCC GTTATTACGT GCTGGACGAT CCTGAAATAA GCGATGCCGC CTTCGATCGG CTCATGCGTG AATTGCAGCA GATTGAATCC GCTCACCCCG AATGGATCAC GCCGGATTCG CCCACCCAGC GAGTCGGCAG CCCGACATTT ACCACCCGTT TCGCCCCCGT TACACATCAT CAGGCCATGT TGTCGCTGGA TAATGTGTTC AGCGTCGAGG AATGGGATGC TTTTACCCAG CGTATTCAGG ATCGCTTGAA GCGCGATGCA CCGCTCGTGT TTGCCGCCGA ACCTAAATTC GATGGCCTCG CGATCAACCT GATCTACCGT CAGGGGCAGC TGGTGCAGGC CGCAACGCGC GGCGATGGAC AGACCGGCGA GGATGTGACC TTGAACGTCC GCACCATCGC CGCCATTCCC CAGCAATTAC CGGATTCGCT GCTCTCCTGC GATCTGCTGG AAGTGCGCGG TGAGATCGTC ATGTCGCACA AGGCCTTCGC CGCGCTGAAT GCCGCCGCCG ATGCCCGTGG TGACAAACGC TTCGTGAACC CGAGGAACGC CGCCGCCGGC TCCTTGCGGC AAAAGGACCC GCGAATAACG GCCAAGCGCC AGCTACAGTT TTTCGCCTAT GGTGTGGGCG CGGTTGATGG CGCCGATTTG CCCGATAGCC AACTGGGCCT GCTCGATTGG TTGGCCGATT TGGGGTTTAC CGTCAGCGAG TGGCGTCGCC GCTGCGAGGG GCGCGATGAG GTGCTGGCCT ATCAGCAGGA AATGAGCGCG CGCCGGTCGC AACTCGATTA CGACATCGAT GGCGTCGTGT TCAAAATCAA CGCCCAGTCC GAGCAGGATG CGCTGGGCTT TGTGGCCAAG GCGCCGCGTT GGGCCATCGC ATTCAAGTTC CCGGCAGAAG AGGCCACAAG CCGCGTCCAC GCGGTCGATT TTCAGGTAGG CCGCACCGGA GCGCTCACGC CGGTTGCGCG CATTGATCCG GTGTTTGTCG GTGGGGTCAC GGTGTCTAAC ATCACCCTGC ACAATATCGA TGAAATTACG CGCAAGGATA TTCGGATTGG CGATACGGTC GTTGTCCGGC GGGCAGGCGA TGTGATTCCC GAAGTTGTTC GCGTGCTGCC TGAATTGCGC CCAGCCGATG CCCGCCTAGT GGCGCTGCCC GCCACTTGCC CCGTTTGTGG TTCCGAAGTT GTTCGAGCAG AAGGTGAGGC CATAGCCCGT TGCAGTGGCG GTCTTTTCTG CCCGGCCCAG CGCCGTGAGG CCATCAAGCA CTTCGCCAGT CGCAAGGCGA TGAATATCGA TGGGCTAGGC GAAAAGTGGA TCGAACTGCT GCTCGAACAC AAGCTGGTCG AGCATGTCGA TGATTTGTTT CATCTCACCG TGCCGCAGGT GTTGACCCTG CCACGAATGG GTGAAAAATC CGCGCAGAAC CTTGTGGATG CCTTGTCTGC AGCCAAACAA ACCACCTTGC CCCGTTTCTT GTATGCGCTG GGTATTCGGG AAGTGGGCGA GGTGACGGCT GCGGGGCTGG CGGCTCACTT CCGTAATCTG GATGCGCTGA ACGCCGCGAC GCTTGAGGAT CTGCAAGCCG TGCCGGATGT AGGGCCGGTG GTGGCGCAGC ACGTATTTAC GTTCCTGCGT CAGCCACACA ATCAGGAAGT CATCCGCAAT CTGATCGATG CCGGAGTACA CTGGCCCGCC ATCGTTGCAA CGGATGCGAA TGCATTGCCG CTTGCCGGCA GAACCTATGT GCTGACGGGT ACGTTGGTTG GCATGTCGCG AGAAGAGGCA GGCGAACGGC TCAAGGCGCT GGGCGCAAAA GTCAGCGGCA GCGTTTCCAG CAAAACCACC GCCGTGATCG CGGGGAGCGA GGCGGGCAGT AAACTGACCA AAGCAAATGA TCTGGGCGTG CCCGTGCTGG ATGAAACCGA CTTGCAGAAA CTACTAAGGA ATCTCTGA
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Protein sequence | MASSLPDLFS APSEDGDRAR LLALRDEIER HNFRYYVLDD PEISDAAFDR LMRELQQIES AHPEWITPDS PTQRVGSPTF TTRFAPVTHH QAMLSLDNVF SVEEWDAFTQ RIQDRLKRDA PLVFAAEPKF DGLAINLIYR QGQLVQAATR GDGQTGEDVT LNVRTIAAIP QQLPDSLLSC DLLEVRGEIV MSHKAFAALN AAADARGDKR FVNPRNAAAG SLRQKDPRIT AKRQLQFFAY GVGAVDGADL PDSQLGLLDW LADLGFTVSE WRRRCEGRDE VLAYQQEMSA RRSQLDYDID GVVFKINAQS EQDALGFVAK APRWAIAFKF PAEEATSRVH AVDFQVGRTG ALTPVARIDP VFVGGVTVSN ITLHNIDEIT RKDIRIGDTV VVRRAGDVIP EVVRVLPELR PADARLVALP ATCPVCGSEV VRAEGEAIAR CSGGLFCPAQ RREAIKHFAS RKAMNIDGLG EKWIELLLEH KLVEHVDDLF HLTVPQVLTL PRMGEKSAQN LVDALSAAKQ TTLPRFLYAL GIREVGEVTA AGLAAHFRNL DALNAATLED LQAVPDVGPV VAQHVFTFLR QPHNQEVIRN LIDAGVHWPA IVATDANALP LAGRTYVLTG TLVGMSREEA GERLKALGAK VSGSVSSKTT AVIAGSEAGS KLTKANDLGV PVLDETDLQK LLRNL
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