| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_0154 |
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| Symbol | |
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| ID | 8533268 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 150296 |
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| End bp | 152344 |
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| Gene Length | 2049 bp |
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| Protein Length | 682 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 646382532 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_003262065 |
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| Protein GI | 261854782 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCACGA GTGCCCCAAA GAAGTTGAAC AGCACGTTGC TTGCGCCCGT GTTCATCCCT
TCGATCATTG TGATCACCCT GCTTGTTATC GGCACCGTGG CCGATCCCAA GCGCGCCGGT
GATGCGTTCT CGGCGACGCT CGCATTCATC ACCAACGACT TCGGCTGGTT CTACATGCTG
GCCGTGGCCT TGTTCCTGAT CTTTATCGTG GTTGTTGCCA TCTCACCCTG GGGCAAAATC
AAGCTGGGGC CCGATCACGC GGAACCGGAA TACAGTTTTT CCGCCTGGTT TGCGATGCTG
TTTTCCGCAG GCTACGGCAT TGCGCTGTTG TTTTTTGGTG TGGCAGAACC GGTTTTGCAC
TACGCCGACC CGCCGGTCGG TGATCCGCGC ACTATCGAAG CGGCCCGGCA GTCGATGCAG
ATCACCTTCT TCCACTGGGG CTTTCATATT TGGGCGATTT ACGGCTTGGT CGGGTTGGTG
CTGGCCTATT TCGGTTTCCG TCATGGCTTG CCGTTGTCCA TGCGCTCGGC GCTTTATCCA
CTGGTGGGTG ATCGAATCTA CGGGCCAATT GGCCACACCG TGGATGTGTT TGCCGTGCTG
GGCACCATGT TCGGTATCGC CACGACCTTG GGGCTTTCGG TGGCCCAGCT CAATGCGGGG
CTCAATTACC TGTGGCCGAG CGTTCCGGTC AATATTACCG TGCAAATCAT TTCGATTGCG
CTGATCACCG CATTGGCGAC GCTCTCGGTG GTGGCGGGGA TGGACGCCGG CATCAAGCGC
CTGTCGCAGT TGAATATGCT GTTGGCCATC GCCTTGATGC TGTTCGTGTT TGCGGTCGGT
CCTACTGTTT TCATCCTTAA AACCTTCATG CAGAACACAG GCAGTTATTT GTCCAACATC
GTCGAGCGTT CGTTCAGCCT CGAAGCCTAC ACGGGCGGCA AATGGATCGG TAACTGGACG
CTGTTCATCT TTGGTTGGAC CATTGCATGG GCGCCCTTTG TCGGGTTGTT CATCGCCAAA
ATCAGCCGGG GGCGCACCAT CCGCCAGTTC GTATTGGGTG TGATGGTCGT GCCCACACTC
TTTACCTTTT TCTGGTTTTC CGTGTTTGGC GACACGGCGC TCCATGCCAT CATGGTGGAT
GGGTACACGC ACCTGATCGA TCAAGTGGAG CAAAACAAGG CGATTGCGCT GTTCAAGCTG
TTCGAGCATC TGCCGTTCGC GTCGATCACC TCGTTTCTGG CGATCATTCT GATTGTGACC
TTCTTTGTAA CGTCTGCCGA TTCGGGCGCA CTGGTGGTCG ATTCGCTCGC ATCGGGCGGA
GCGTTGCGTA CGCCCGTTTG GCAGCGCATT TTCTGGGCGT CCTCACAGGG CGTGTTGGCG
GCAGTTCTGC TTCTGGCCGG TGGCCTGTCG GCGTTGCAAA CCGCGTCAAT CACGTCGGCC
TTGCCCTTTG CGATCATCAT GCTGATATCA GCCGTTGGCC TCTGGCGAGC GCTTCAAATC
GAGGGCTATC GTGAAACGAG CCTGCAGCAT CACATGAACT CCGGTCGTCA TAATCGTTTG
GGCGATTCAA ATCATTGGGA AAAACGTCTG CGTAATTTGG TTGATTTTCC ATCGAGAGAA
AATGTATCCA AATACATCGA AACCACGGTG GCCGATTCGC TTAAAACCGT TGAAGCTGAG
CTCAAAAAGC AAGATTGGCC GGTTAAGCTC ACGCAGAACA AAGAACTTTG CCGATATAAA
TTGTCTGTGA TCAGCGGCGA AGACATGGCC TTTGAATACG AGGTACGATT GCGCGGCTTT
GCCAAGCCAA GTTACGCTTT CCCAGCCATT ACTCGCGATA ATGATGGCGA TGAGCAGTAT
TACCGTGCCG AAGTGTTTAT GCGTCGCGGC GGCCTCGCCT ACGACGTGTA TGGCTACGAA
AAAGACCAGC TCATCAGCGA TGTATTGGAT CACTTTGAGA AATACATGCA CTTCTTGCAC
ACCACGCCCG CGATTTTGCC GTGGAAAGTG GTGGATGATG AAGAGGGCGA AGTGTCGGGC
GCGAAATGA
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| Protein sequence | MSTSAPKKLN STLLAPVFIP SIIVITLLVI GTVADPKRAG DAFSATLAFI TNDFGWFYML
AVALFLIFIV VVAISPWGKI KLGPDHAEPE YSFSAWFAML FSAGYGIALL FFGVAEPVLH
YADPPVGDPR TIEAARQSMQ ITFFHWGFHI WAIYGLVGLV LAYFGFRHGL PLSMRSALYP
LVGDRIYGPI GHTVDVFAVL GTMFGIATTL GLSVAQLNAG LNYLWPSVPV NITVQIISIA
LITALATLSV VAGMDAGIKR LSQLNMLLAI ALMLFVFAVG PTVFILKTFM QNTGSYLSNI
VERSFSLEAY TGGKWIGNWT LFIFGWTIAW APFVGLFIAK ISRGRTIRQF VLGVMVVPTL
FTFFWFSVFG DTALHAIMVD GYTHLIDQVE QNKAIALFKL FEHLPFASIT SFLAIILIVT
FFVTSADSGA LVVDSLASGG ALRTPVWQRI FWASSQGVLA AVLLLAGGLS ALQTASITSA
LPFAIIMLIS AVGLWRALQI EGYRETSLQH HMNSGRHNRL GDSNHWEKRL RNLVDFPSRE
NVSKYIETTV ADSLKTVEAE LKKQDWPVKL TQNKELCRYK LSVISGEDMA FEYEVRLRGF
AKPSYAFPAI TRDNDGDEQY YRAEVFMRRG GLAYDVYGYE KDQLISDVLD HFEKYMHFLH
TTPAILPWKV VDDEEGEVSG AK
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