| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hmuk_3151 |
|---|
| Symbol | |
|---|
| ID | 8412704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halomicrobium mukohataei DSM 12286 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013202 |
|---|
| Strand | - |
|---|
| Start bp | 3039061 |
|---|
| End bp | 3043830 |
|---|
| Gene Length | 4770 bp |
|---|
| Protein Length | 1589 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 645021498 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_003178963 |
|---|
| Protein GI | 257389190 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2202] FOG: PAS/PAC domain
[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.274524 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCTCAC TCTGGCACGA CGTGGTCCCG TTCGTCGGGG CGGCCAGCGG GGAGTGGTTC
TTCTCGGTCT CCGGCGGCGT GACGGGGTTT GACACGTTCT CGATCGCGTT CGTGCTTACC
GGACTGGTCG GCCTGGCGGT CCGGGGCGAC GCCGACGATC CGATCGCACA GTTGACCGAG
AAGGTGCGTC GCGTGGCAGC CGGCGCGGAC GACGTCACGT TCACGACCGA CCGCGACGAC
GAGATCGGTG CGCTGTACGA CGCGATCGAC GACCTCGTCA CTGCGACCGA CGCCGAGGAC
CAGACCGACG AGGCGTTTCG CCGTTCGATC TACGAGATCA CGAGCGATCC GGCGCTCGAC
GACGACGCGA AACTCGACCG GCTGCTCGAA CTGGGCTGTG AGCGACTCGG GGTCGAGACC
GGCTTCATCG CACAGATCGA CCAGGCCGAC GGGCGCTACG AGATCGAGCG GGCGACCGGC
CCGCTCGTCG CCGAGGAGAG CGTGTTCGAC CTCTCCGAGA CGCTCTGTCG TCGGACGATC
ACGTCCGACG ACGTGCTCGG TATCGCCGAC ACGGCCGCGG CGAGCGACCT CGACGACTCC
GAGTACGCGG ACTCGGACGT GCGCAGCTAC ATCGGCTCGA AGCTACTCGT CGATGGGGAA
CTGTACGGGA CGCTCTGTTT CGTCGGCCCG GAGCCCCGAG AGCGTCCGTT CAGCCACGCA
GAGAAGGCCT TCGTCGATCT CGTGGGTCGG TGGATCAGCC AGACCGTCGA GCGCCGCGAA
CGGATGGAGA CGCTGGAGCG ACACGCCTCG ATGCTCGATT CCCTGTTCGA GGAGTTGCCC
GTCTCCCTGT ACGTCAAAGA CGAGGCGGGG AGACACCTCC GCAAGTCGGT CTCCGACCGG
GTGACGGAGT TCCCGGACGA CGAGGAGTGG TACCGCGGCA AGACCGACCT CGACATCTAC
GACGAGGAGC TGGCCCGACA GACCTACGCC GACGACATGC AGGTCATCGA GTCGGGCGAA
CCGATCATCG GGAAAGAGGA GTACAATCCC GTGGCAGAGG AGTGGGTGGT CTCCTCCAAA
GTGCCCTGGC GAGGACCCGA CGGCGAGGTG TGTGGGCTGA TCGGCGTCAC GCAGTACGTC
ACCGAGCGAA AGGAACACGA ACGGAAGCTG GAGGCGATCG TCCAGAACAC GACCAACCAG
ATATACATCA AGGACTCGGA CGGCGTCTAC CAGTTCGTCA ACGAGGCGAC TGCGGAGCTG
TTCGACCGCG AGCCGGCGGA GATTCTGGGG AAGCGAGACG ACGAACTCTT CGACAGCGGG
ACCACCGAGG CGCTCATTTC GGAGGACCGC AACGTCCTGT CGTCGGGCGA AACCGTGACG
ACGACGACGA CGGCGGAGAT CGACGGCGAG CGCCGGTCCT TCCTCGACAA CAAGTACCCG
TACCGAGACG AGTCGGGCGA GATCATCGGC GTCATGGGGA TCAGCAAGGA CATCACCGAG
CGACAGGCAC GCGAACGAAA GCTGCGTGAG CGCAAGCGCG AGCTCGCGAC CCTGATGAGC
AACCTCCCGG GGATGGTGTA TCGCTGTCGA AACGAACCCG ACTGGCCCTT CGAGTTCGTC
AGCGACGGGT GCCGGGAGCT GACGGGGTAC GAGCCAGCGG CGATCCGGAG CGGGGCGGTC
AACTGGGCCG AAGACATCAT CGTCGGCGAC AACGACGAGC TGTGGGAGAC GGTCCAGCGC
GCTGTCGACG AACACGAACA GTTCGAGGTC ACCTATCCGA TCGAGACCGC CGACGGGCAG
CGTCGGTGGC TGTGGGAACG CGGCGTCGGT ATCTACGACG ACGACGGGAC CGTCCGAGCC
CTGGAGGGCG TCGTCACCGA CGTGACCGAT CGCAAGGCAC GCGAGCGCGA GCTTCGCCGG
ACCAACGAGC GGCTCAACAC GCTCATCGAC GCCTCGCCCG ACGCCCTCAT TCTGACCGAC
CCGGACGGCG TCGTCGAGCT GTGGAACCCC GCCGCCGAGC GCATCTTCGG CTGGAGCGAG
TCGGAGGTCG TCGGCGACAC GCTGCCGTTC GTCCCGGCCG ACAGGGAGTC CGAGTTCGAC
GCGTTCCGCG AGCGGCTGCT GTCCGGCGAG TCGATCAGCA GCGTCGAGAC GCGACGACGC
CGCACGGACG GCACACTGAT CGACGTGAGC CTCTCGGCGG CCCCGCTGCG AGACGTCGAC
GGCGAGATCA CCGGGATCAT GGCCGTCATG GAGGACATCA CGGAGCGCAA GTGCCAGGAG
CGCCAGCTCC GGGAACACCA GCGCGAACTC GACCGCTACC GGGAGTTCAC CGAAGACATC
CTCGACGCCG TCGACGACGT GTTCTACGTC CTCGACGAGG ACGGCTCCCT CCAGCGCTGG
AACAGCGCAC ACACGCAGGT GACGGGCTAC TCGGACGCGG AGATCGAATC GATGCACGCG
ACGGACTTCT TCGCGCCCGA ACACCGCAGC GAGATCGAGG CGGCGATCGA AGAGACGAAA
GCGACCGGTG ACGCGGTGGT CGAGGTTCCC TACCTGACCA AAGACGGCGA GCAGGTCCCA
CACGAGTTCG TCGCCGTCGC TCTCGAAGAC CCGGACGGGA ACCAGCTCGT CGCGGGAATC
GGGCGAGACA TCAGCGAGCG AAAGCGCCGG GAGCGCCAGC TCGAACGCAC GACGGACCTG
CTTTCGCGAG CCGAAGAGAT GGCGGCGATC GGCGGCTGGG CGGCGGTCGT CGAGGACGGC
GCGGCCGTCG ACACCACGTG GACCGACAAA CTGTTCGACA TCTTCGGGCT GGCCGACGAC
GAGGCCCGCT CGGTGGAGGC GATGCCCCAG TTCTACCACC CCGACGATCG GGAGCGACAC
CGCGACGCCA TCGAGCGCGC GCTCGACCAC GGGATCGGGT GGGAGCAGGA ACTGCGACTC
GACACTCCCG ACGGCACCCA GCGGTGGGTC CACACCATCG GAGAGCCGGT TCTCGAAGAC
GGCACTGTCG TCGAGATCAG GGGCTCGGTC CAGGACATCA CCGCACAGAA GCAACGCGAA
CTCGCGCTGG AGTCGCTCCA CGACTCGGCG CGCGGGCTGT TGACGACGGA GTCGATCGAC
GACGCCACCC GGTTGATCGT CGACACGGCC GCATCGCTGC TCGACCAGGC AGCGGTCGGG
ATCTACCTGT ACGACGAGAC GACGAACCTG CTCGAACCCG CCTCGGTGTC TCCGGGCTTC
GAAGCGCTCT GTGGCGGCGA GCCGGATGCC GTCGGGCCGG GGACGGAGTC GTTCCTCTGG
CACGCCTACG TCACCGGGAC CCAGAGCGTC CTCGAAGGCG TCGACACCAG CGGCGAGTCG
GGCCTTTTCG TCGACGCGGT CGACACCGGC ATCGTGGTGC CGATCGGGAG CCACGGCGTC
TTCGCCGCAC TCGACGAGGC CGGCGAGATC GGTGAGAGAG ATCGTTCCCT CGTCGAGACG
CTGGTCGCGA CCGCGGCGGC CGCCTTCGAG CGACTCGAAA GCGAGGCCAC GCTGCGCGAG
CGCGAGGCCG AGATCGAGGC CCAGAACGAG CGGCTCAGAC GCCAGATCCG GGCCAACGAG
ACGATCCGCT CCGTCGATCA GACCCTCATC GGTGCGACCG ATCGAGACCA GCTCGAAGCG
GCGGTGTGCG AGCGGCTGGT CGACGACGAG GACATCTCCT TCGCCTGGAT CGGGTCGTTC
GATTCCGGCG GCGAGACGCT CCAGGCCCGT GCGTGGGCCG GTGAGGGCGA GTCGTATCTG
GACACGCCCT CGTTCGACCG CTCGGCGACG CACTCCGACC CGGCCGTCTC GGCGGCGGTG
GACGACGAGC CGGTCGCGGT CTCGAACATC GCCCAGAACG TCCAGCAGGC GGCGTGGCGA
CGAGCGGCAC TCGCCGTGGG TCACCAGTCG GCGCTCGCGG TCCCCGTCTC GCTCGACGAC
TACCAGTACG GCGTGCTGGC GGTGTACGCC GACGAGCCGG ACGTGTTCGG CGAGTTCGAG
ACAGCCGTGT TCGCGGAGCT GGGGACGAGC ATCGCCAACG CGATCACGAG CATCACGACC
CGGCAGGCGC TCAACGCCGA CACGCTGACC GCGCTCGAAC TGTGCGTCGA GGACACGACG
GACCCGCTGC TCGACATCGC GTTCGAGAGC GGCTGTACGG TCACTTACGA GGGCGTGGGT
ACCGTTTCGT CCGACGAGAC TCGACTGTTC GTCCGGGTGA GTGGCTGTGC TCCCGCGACC
GTCTCGGAGC TGCTCGCCGA TCGGCATACG ATCGCCGACC ACCACCTCGT CTCCGAGAGC
GAGGACGGCG GCGTGTTCGA GGTGACGATC CGGGGCGAGA CGGTCCTCGC TCGACTCGCC
CGGCAGGGCG GGCGAGTGCG AAAGATCGCC GCCGAGGGGT CCGGCATCGA CATCGAGGTC
GACGTGCCGA CCTCGGTGGA CGTGCGCTCG TTCGTCGAGA CGCTCACCGA CGACGGCACG
GTCGAACTGG TCAGCCGACG CGAACGCGCA CGCTCTCCGG AGTCCGACCC CGCGCTCGCC
GAGTCGATCC TGGGGGCGTT GACGGACCGC CAGCGGGAGG TTCTCCGGAC GGGCTACTTC
TCGGGGTTCT TCAACTGGCC GCGCGACACG ACCGGCCAGG AACTCGCGGC GATGCTCGAC
GTGTCCCAGC CGACCGTCAA CCGCCACCTC CGACTGGGCC AACAGCGAGT CATGCGACGG
CTGTTCGACG ACGAGCCCGA AGCGGAGTGA
|
|---|
| Protein sequence | MISLWHDVVP FVGAASGEWF FSVSGGVTGF DTFSIAFVLT GLVGLAVRGD ADDPIAQLTE
KVRRVAAGAD DVTFTTDRDD EIGALYDAID DLVTATDAED QTDEAFRRSI YEITSDPALD
DDAKLDRLLE LGCERLGVET GFIAQIDQAD GRYEIERATG PLVAEESVFD LSETLCRRTI
TSDDVLGIAD TAAASDLDDS EYADSDVRSY IGSKLLVDGE LYGTLCFVGP EPRERPFSHA
EKAFVDLVGR WISQTVERRE RMETLERHAS MLDSLFEELP VSLYVKDEAG RHLRKSVSDR
VTEFPDDEEW YRGKTDLDIY DEELARQTYA DDMQVIESGE PIIGKEEYNP VAEEWVVSSK
VPWRGPDGEV CGLIGVTQYV TERKEHERKL EAIVQNTTNQ IYIKDSDGVY QFVNEATAEL
FDREPAEILG KRDDELFDSG TTEALISEDR NVLSSGETVT TTTTAEIDGE RRSFLDNKYP
YRDESGEIIG VMGISKDITE RQARERKLRE RKRELATLMS NLPGMVYRCR NEPDWPFEFV
SDGCRELTGY EPAAIRSGAV NWAEDIIVGD NDELWETVQR AVDEHEQFEV TYPIETADGQ
RRWLWERGVG IYDDDGTVRA LEGVVTDVTD RKARERELRR TNERLNTLID ASPDALILTD
PDGVVELWNP AAERIFGWSE SEVVGDTLPF VPADRESEFD AFRERLLSGE SISSVETRRR
RTDGTLIDVS LSAAPLRDVD GEITGIMAVM EDITERKCQE RQLREHQREL DRYREFTEDI
LDAVDDVFYV LDEDGSLQRW NSAHTQVTGY SDAEIESMHA TDFFAPEHRS EIEAAIEETK
ATGDAVVEVP YLTKDGEQVP HEFVAVALED PDGNQLVAGI GRDISERKRR ERQLERTTDL
LSRAEEMAAI GGWAAVVEDG AAVDTTWTDK LFDIFGLADD EARSVEAMPQ FYHPDDRERH
RDAIERALDH GIGWEQELRL DTPDGTQRWV HTIGEPVLED GTVVEIRGSV QDITAQKQRE
LALESLHDSA RGLLTTESID DATRLIVDTA ASLLDQAAVG IYLYDETTNL LEPASVSPGF
EALCGGEPDA VGPGTESFLW HAYVTGTQSV LEGVDTSGES GLFVDAVDTG IVVPIGSHGV
FAALDEAGEI GERDRSLVET LVATAAAAFE RLESEATLRE REAEIEAQNE RLRRQIRANE
TIRSVDQTLI GATDRDQLEA AVCERLVDDE DISFAWIGSF DSGGETLQAR AWAGEGESYL
DTPSFDRSAT HSDPAVSAAV DDEPVAVSNI AQNVQQAAWR RAALAVGHQS ALAVPVSLDD
YQYGVLAVYA DEPDVFGEFE TAVFAELGTS IANAITSITT RQALNADTLT ALELCVEDTT
DPLLDIAFES GCTVTYEGVG TVSSDETRLF VRVSGCAPAT VSELLADRHT IADHHLVSES
EDGGVFEVTI RGETVLARLA RQGGRVRKIA AEGSGIDIEV DVPTSVDVRS FVETLTDDGT
VELVSRRERA RSPESDPALA ESILGALTDR QREVLRTGYF SGFFNWPRDT TGQELAAMLD
VSQPTVNRHL RLGQQRVMRR LFDDEPEAE
|
|---|
| |