Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hmuk_2932 |
Symbol | |
ID | 8412485 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halomicrobium mukohataei DSM 12286 |
Kingdom | Archaea |
Replicon accession | NC_013202 |
Strand | - |
Start bp | 2819374 |
End bp | 2820171 |
Gene Length | 798 bp |
Protein Length | 265 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 645021279 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_003178744 |
Protein GI | 257388971 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.00976663 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACGTGT TCGGTCTGAT CGGGAACCCG GTCGGTCACT CGCTGTCGCC GCCGATGCAC GAAGCGGCCT ACGAACAGCT CGACATGGAC GCTCGCTACG TCACCTTCGA ACCGGACGAA GACGCGGCCG CCGCCGCCAT CGAGAGCGCC CGGACGCTGG GAATCACGGG TCTGAACGTT ACGATCCCGT TCAAGCAGGC GGCCTTCGAG GCCGTCGACC CGGATCCGCT GGCCCGGCGG ATCGGTGCGG TCAACACGGT CGACCTGACC GGCGACGAGC CGCGGGGATA CAACACGGAC GCCGTCGGTG CCGTGCGCGC GCTCCGCCGT CACGACGTGG CCCTCGACGG CACCGCAGTC GTGGTCGGCG CGGGCGGTGC CGGCCGGGCG GTCGCGTTCG GGCTGGCCGA CGAGGGGATG TCCGTCCGGA TCGCCAACCG GACCGTCGAG CGCGCTCACG ACCTCGCCGC GGACGTGCCG GGGGCGACCG GCCACGGACT CGACGAACTG CACGACACCG TCGCCGACGC GGACGTGCTG GTCAACTGCA CCAGCGTCGG GATGGACGAG GACGCGACCC CGGTGCCGGC CGACGCCCTC CACGGCGATC TGTCCGTCCT CGACGCCGTC TACTCGCCGA TCGAGACGCG ACTGCTCCGG GACGCCGCCG CCGCCGGTGG GACGACCGTC GACGGCGCGT GGATGCTCCT GTTCCAGGGC GTCGAAGCCT TCGAGCGCTG GACCGGCCTG GATGCACCGG TCGATCACAT GAACGACGCG CTCCGCGATC GCCTGTGA
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Protein sequence | MDVFGLIGNP VGHSLSPPMH EAAYEQLDMD ARYVTFEPDE DAAAAAIESA RTLGITGLNV TIPFKQAAFE AVDPDPLARR IGAVNTVDLT GDEPRGYNTD AVGAVRALRR HDVALDGTAV VVGAGGAGRA VAFGLADEGM SVRIANRTVE RAHDLAADVP GATGHGLDEL HDTVADADVL VNCTSVGMDE DATPVPADAL HGDLSVLDAV YSPIETRLLR DAAAAGGTTV DGAWMLLFQG VEAFERWTGL DAPVDHMNDA LRDRL
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