| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hmuk_1084 |
|---|
| Symbol | ligA |
|---|
| ID | 8410603 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halomicrobium mukohataei DSM 12286 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013202 |
|---|
| Strand | - |
|---|
| Start bp | 1030909 |
|---|
| End bp | 1033011 |
|---|
| Gene Length | 2103 bp |
|---|
| Protein Length | 700 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 645019420 |
|---|
| Product | NAD-dependent DNA ligase LigA |
|---|
| Protein accession | YP_003176918 |
|---|
| Protein GI | 257387145 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.419808 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTCGG AGACGGAGGC GACACCACCG CCGGACAACC CCTACGTCGA GGACCCGCCC
ACCGAGTTCG AGCCGGTCGA GGATTTCTCC GACGACGAGG CCCGCGAGCA GGCCCAGCGG
CTCCGCGAGG CGATCCGGTA CCACGACCAC CGCTACTACG TGCTGGCCGA TCCGGTGATC
GGGGACCGGG CCTACGACGC GCTGTTCGCC CGGCTCGAAG CCCTCGAAGA CGCCTTCGAC
CTCGATCGCG AGGCCAGTCC GACCCAGCGG GTCGGGGGCG AACCGCTCGA CGAACTCGCG
TCGGTCGAAC ACGTCGCGCC GATGGGCTCG ATCGACCAGG GCGGCGAGGC CAGCGAGGTC
AGAGAGTTCG ACCGCCGAGT GCGGGATCGA CTGTCCGACG CCGGCTACGA CGGCGAGATC
GAGTACTTCT GTGAGCCGAA GTTCGACGGG CTCTCCGTCG AGATCGTCTA CGAGGACGGC
CAGTTCCAGC GGGCCGCGAC CCGAGGGGAC GGCGCGGTCG GCGAGGACGT GACCGAGAAC
GTCCGCACGA TCGCCAGCGT CCCCCAGCGC CTGCGCGGTG ACTACCCCGA CTATCTCGCC
GTGCGGGGCG AGGTGTACAT GCCCCGGGAC GCCTTCACGG CATACAACAG CGAGCGGATC
GAACGGGGCG AGGACCCGTT CGCGAACCCT CGCAACGCCG CGGCCGGGAC GTTGCGACAG
CTCGACCCCT CGGTCACGGC CGAGCGGCCG CTGTCGATCT TCTTGTTCGG CGTCCTCGAC
GCGTCGGTCG ACTTCGACTC CCACGGCGCG CTCCACGAGC GATTTCCGGA GTGGGGACTG
CGCGTCTGTG ACCGGACGAC TGTCGTCGAC GACATCGACG CCGCCATCGA CTACCGGGAC
CGGCAACTCG ACGCGCGAGA CGATCTGGAC TACGAGATCG ACGGCGTCGT GATCAAGGTC
GACGACCGCC GGGCCTGTGA GTTGCTGGGG GCGACCAGCC GCGCCCCGCG GTGGGCCTTC
GCCTACAAGT TCCCCGCTCG CAAGGAACGG ACGACGCTGC GCGACATCGC CGTCCAGGTC
GGCCGGACCG GCCGGCTGAC GCCGGTCGCG CTGCTCGATC CCGTCGAGGT CGGCGGCGTC
ACCGTCTCGC GGGCGTCGCT GCACAACCCC GCACAGATCG AGGAACTGGG CGTCGACGCC
GGTGACACGG TCCGGATCAA GCGAGCCGGC GACGTGATCC CGGACGTGGT CGAAGTCGTC
GAGTCGAGCG GCGAAGCGAC GTTTTCGTTC CCCGACCGCT GTCCGGTCTG TGAGAGCGCA
GTCGAGCGCG ACGGGCCGAT GGCCTTCTGT ACCGGGGGGC TCGCCTGCCC CGCCCAGCGC
GAGCGCGCGA TCGAACACTA CGCGAGCCGC GACGCGCTGG ACATCGAGGG GGTGGGCGAG
AAGGCCGTCG CGAAGCTCCT GGACGCGGAG CTCGTCGAGA GCCCGGCGGA CCTCTACGAT
CTGACCGTCG ACGAACTGGC CGCCCTTTCG GGGTGGGGCC AGCGCAGCGC CGAAAACCTC
GTCGCGGAGG TCGACGCGAG CCGCGAGCCG CCGCTGGCGA ACTTCCTCGT CGCGCTCGGG
ATCCACGACG TGGGGACGGT CACGGCCCGG AATCTCGCCC GCGAGTTCGG GAGCTTCGAG
GCGATCCGCG AGGCCGGCGC GGCCGGCGAC ACGGACGCGT TCGAGGCCGT CGACGACGTG
GGGCCGGTCG TCGCAGAGAG CATCTGCGAG TTCTTCCGTG GCGAGCGCAA CGAGGCGGTG
CTCGACGACC TGCTCGACCA CGTCGACCCC CAGCCGGCCG ACACGGAGAC CGGCGACGCG
CTCGACGGAC AGACGTTCGT GTTCACGGGC TCGCTGGCGG GATACACCCG CAGCGAGGCA
CAGGATCTGG TCGAGGCCCA CGGCGGCTCT GCGACAAGCA GCGTCTCGGG CAACACCGAC
TATCTCGTCG TCGGCGACAA CCCCGGACAG TCCAAGCGCG ACGACGCCGA GGCGGAAGGC
GTCGAGACGA TCGATCAAGA ATCGTTCGAG GAGTTGCTCG CCGACCGCGG GATCGAGAAC
TGA
|
|---|
| Protein sequence | MSSETEATPP PDNPYVEDPP TEFEPVEDFS DDEAREQAQR LREAIRYHDH RYYVLADPVI
GDRAYDALFA RLEALEDAFD LDREASPTQR VGGEPLDELA SVEHVAPMGS IDQGGEASEV
REFDRRVRDR LSDAGYDGEI EYFCEPKFDG LSVEIVYEDG QFQRAATRGD GAVGEDVTEN
VRTIASVPQR LRGDYPDYLA VRGEVYMPRD AFTAYNSERI ERGEDPFANP RNAAAGTLRQ
LDPSVTAERP LSIFLFGVLD ASVDFDSHGA LHERFPEWGL RVCDRTTVVD DIDAAIDYRD
RQLDARDDLD YEIDGVVIKV DDRRACELLG ATSRAPRWAF AYKFPARKER TTLRDIAVQV
GRTGRLTPVA LLDPVEVGGV TVSRASLHNP AQIEELGVDA GDTVRIKRAG DVIPDVVEVV
ESSGEATFSF PDRCPVCESA VERDGPMAFC TGGLACPAQR ERAIEHYASR DALDIEGVGE
KAVAKLLDAE LVESPADLYD LTVDELAALS GWGQRSAENL VAEVDASREP PLANFLVALG
IHDVGTVTAR NLAREFGSFE AIREAGAAGD TDAFEAVDDV GPVVAESICE FFRGERNEAV
LDDLLDHVDP QPADTETGDA LDGQTFVFTG SLAGYTRSEA QDLVEAHGGS ATSSVSGNTD
YLVVGDNPGQ SKRDDAEAEG VETIDQESFE ELLADRGIEN
|
|---|
| |