Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hmuk_0276 |
Symbol | |
ID | 8409774 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halomicrobium mukohataei DSM 12286 |
Kingdom | Archaea |
Replicon accession | NC_013202 |
Strand | + |
Start bp | 270815 |
End bp | 271780 |
Gene Length | 966 bp |
Protein Length | 321 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 645018601 |
Product | Squalene/phytoene synthase |
Protein accession | YP_003176120 |
Protein GI | 257386347 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1562] Phytoene/squalene synthetase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 0.54913 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.0299312 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGTAGACA CTGACGATAT CAAGGCGAGT AAATCGATTC AACAGCGCAC TGGCCGGACC TTCCACCTGG CGACCCGCGT CCTCCCCAAG CGGATCCGCC ACGCCACGTA CGTCCTCTAT GCGTTCTTCC GGGTAGCCGA CGACGTGGTC GACCAGCCCG ACGGCCCGGG GCCGGCGGTC CAGCACGAGC GCCTCGAAGA GATCCGAGAG GCCGCCCTCG GTCACGCCTC GGCGACGGGC GACGACGCGG CGGTACTGGA AGCGTTCGCG GAGTTGCGCG AGCGTCACGA CATCCCCGAC GAGGAGGTCA ACGTCTTCAT CGACGCGATG GAGATGGACA TCGCCCGGGC CCGCTACGAG ACGTTCGACG ACCTCGTGGA GTACATGCGC GGGTCGGCCG TCGCCGTCGG CAACATGATG ATGGACGTGA TGGACGTCGA ACAGCCGGAG ACGGCACGGC CACACGCCGC GGCGCTGGCC GAGGCGTTCC AGCTGACGAA CTTCCTCCGG GACGTGCGCG AGGACATCCA CGAGTACGGT CGAGTTTACC TGCCCCAGGC GACGCTTGCG GAACACGGCG TCACCGAGGA CGACCTCGCC GAGGCGACCG TCACCGACGA CTTCCGGGCG GTGATGCAGA CGGAGCTGGC CCGGACAGAA CGACGGTACC ACGAGGGTGT CGCCGGAATC AGATACCTCC CCGAGGACAG CCAGTTCGCC GTCCTCCTGT CGGCGGTACT GTACGCCGAA CACCACCGAC TCATCAGAGC ACGGGGCTAC GACGTGCTCA CCGAGACGCC CGAGCTCACC CGCCGTCGGC GGCTCTGGCT GCTGGCCCGG ACCTGGTGGC ACTGGCGTCG CCACCACGAT CCCGAGGCCG CGTTCTACGC GGTCAGTGCG ATCTCCGAGC CGTCGCCCGC CGCGGAGACG CCGGTCGGCG TCCGAGATTC GAGCCAGCCG GCCTGA
|
Protein sequence | MVDTDDIKAS KSIQQRTGRT FHLATRVLPK RIRHATYVLY AFFRVADDVV DQPDGPGPAV QHERLEEIRE AALGHASATG DDAAVLEAFA ELRERHDIPD EEVNVFIDAM EMDIARARYE TFDDLVEYMR GSAVAVGNMM MDVMDVEQPE TARPHAAALA EAFQLTNFLR DVREDIHEYG RVYLPQATLA EHGVTEDDLA EATVTDDFRA VMQTELARTE RRYHEGVAGI RYLPEDSQFA VLLSAVLYAE HHRLIRARGY DVLTETPELT RRRRLWLLAR TWWHWRRHHD PEAAFYAVSA ISEPSPAAET PVGVRDSSQP A
|
| |