| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_0878 |
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| Symbol | |
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| ID | 7401248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorubrum lacusprofundi ATCC 49239 |
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| Kingdom | Archaea |
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| Replicon accession | NC_012029 |
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| Strand | + |
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| Start bp | 869148 |
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| End bp | 870932 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 643707943 |
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| Product | DNA ligase I, ATP-dependent Dnl1 |
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| Protein accession | YP_002565546 |
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| Protein GI | 222479309 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | [TIGR00574] DNA ligase I, ATP-dependent (dnl1) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0334376 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGTTCG CAGCGTTCGC CGACCGGGCG GAGGAGCTGG CGGCCGAGCC CGCCGACATC
GGAACGACTC GCCTCGTCAC CGACCTACTC GGGGCCGCCG GGGGAACCGA CGAAAACGAC
GACGATCTCG CGACGGTCAC CCGGTTCCTG CTCGGCCGCG TCTTCCCGGC CCACGACACC
CGGACGCTTG ACGTGGGACC GGCCCTCTGT CGCGAGGCGA TCGCCCGCGC CGCCGGGCCG
AACGTGACCG CCGACGACGT GGAGGACCGA CTGGCCGAGG AAGGCGAGAT CGGTGCGGTC
GCAGCAGGCT TCGAGTTCGG CGGCCAGCGA GGGCTCGCCG CCTTCGGCGA GGGGCGGGAC
CGGCTCACCG TCGCCGCGGT CGATGCGGAG CTACGCAGGT TGGCGGCCGC CGCCGGCGAC
GGTAGCGAGT CCCACAAGCG CGACGCCCTG TTCGGGCTGT TCAACCGGTG TGAGCCTGCC
GAGGCGAAGG TTATCGCCCG GCTCGTGCTC GGCGAGATGC GGCTCGGCGT CGGCGAGGGG
GCCGTCCGTG ACGCGATCGC AGAGGCGTTT CTCGCGGGGA ACCCGGAAGG CGACGAACGT
GACGAGAGCG ACACCGACGA CGATCCGATT CTCCGCGCCG GCGACGAGGC GGTCGTAGCC
GTCGAGCGCG CGCTTCAGGT GACCAACGAC TACGGCCGCG TCGCGGTCCT CGCCCGCGAT
GAGGGGCTCA ACGGGCTGCG CGCTGAGGGG CTGGCGGTCG GCCGACCGGT ACAGGCGATG
CTCGCGCAGG CCGGGACGGC GACCGACGCG GTCGAGGCGT TCGGCGAGGT CGCCGTCGAG
ACCAAGTTCG ACGGTGCGCG GGTGCAGGTC CACTACGTGC CCGAGTCGGC CGCCGAGGGC
GACGACGCTG CTGGCGGCAC CGAACTCGGC CCGCGGATCT ACTCGCGGAA CATGGACGAC
GTGACCGACG CCCTCCCGGA GGTCGTCGAG TACGTCGAAG CGCGCGTCTC GGTCCCTGTC
ATCCTCGACG GGGAAGTTGT GGCGGTCGAC GACGACGGCG ATCCCCTCCC GTTTCAAGAG
GTGCTGCGAC GCTTCCGGCG AAAACACGAC GTTGACCGGA TGCGGGAGGA GGTCGGGCTC
CGGCTCCACG CGTTCGACTG CCTCCACGCG GACGGCGAGG ACCTGCTCGA CGAACCGTTC
CGCGCCCGCC ACGACCGACT CGCCGAGGTT CTGTCCGACG CGGCCGCGAG CGTCGAATTC
GCGGGCGATC CGGCGGCGAT CGAGGCGGCG GAGGCGGCCG CGCTCGGCGC GGGCCACGAG
GGCGTGATGC TGAAGAATCC CGAGGCGGCG TACACTCCGG GTAACCGCGG TCGCGACTGG
CTGAAGCGCA AGCCCGACGT GGAGACGCTC GACGCGGTCG TGGTCGGCGC GGAGTGGGGC
GAGGGGCGCC GAGCGGAGCT GTTCGGGACG TTCCTGCTCG GCGTGCGGGC GGGAGACGAC
GAACTCGCCA CAATCGGCAA GGTCGCGACC GGACTCACCG ACGAGGAGCT CGCCGACCTC
ACCGAGCGGC TGGAGCCCCA CGTGGTGAGT GAGGACGGAA CCGAGATCGA AATCCGCCCT
GAGGTCGTCC TCGAAGTCGG GTACGAGGAG ATCCAGACCT CGCCGACCTA CTCGTCGGGC
TACGCCCTTC GATTCCCGCG GTTCGTCGGC GTGCGCGACG ACAAGTCGGT CGATGACGCC
GACTCATTGG AGCGCGTCGT GCGCCTCGCC GGGGATGAGA AGTGA
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| Protein sequence | MEFAAFADRA EELAAEPADI GTTRLVTDLL GAAGGTDEND DDLATVTRFL LGRVFPAHDT
RTLDVGPALC REAIARAAGP NVTADDVEDR LAEEGEIGAV AAGFEFGGQR GLAAFGEGRD
RLTVAAVDAE LRRLAAAAGD GSESHKRDAL FGLFNRCEPA EAKVIARLVL GEMRLGVGEG
AVRDAIAEAF LAGNPEGDER DESDTDDDPI LRAGDEAVVA VERALQVTND YGRVAVLARD
EGLNGLRAEG LAVGRPVQAM LAQAGTATDA VEAFGEVAVE TKFDGARVQV HYVPESAAEG
DDAAGGTELG PRIYSRNMDD VTDALPEVVE YVEARVSVPV ILDGEVVAVD DDGDPLPFQE
VLRRFRRKHD VDRMREEVGL RLHAFDCLHA DGEDLLDEPF RARHDRLAEV LSDAAASVEF
AGDPAAIEAA EAAALGAGHE GVMLKNPEAA YTPGNRGRDW LKRKPDVETL DAVVVGAEWG
EGRRAELFGT FLLGVRAGDD ELATIGKVAT GLTDEELADL TERLEPHVVS EDGTEIEIRP
EVVLEVGYEE IQTSPTYSSG YALRFPRFVG VRDDKSVDDA DSLERVVRLA GDEK
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