| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_0078 |
|---|
| Symbol | |
|---|
| ID | 7401433 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | + |
|---|
| Start bp | 82260 |
|---|
| End bp | 84206 |
|---|
| Gene Length | 1947 bp |
|---|
| Protein Length | 648 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643707139 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_002564754 |
|---|
| Protein GI | 222478517 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.213516 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAGCG CCGAATGGGA GGACGACGAC CCCTTCGAGG AACAGCGGGA CAAGATCGAG
AACCCGATGA AACGACTGTT CCTCGCGTAC GGTCGCGACT ACCTCCCGCA GGTCTCCGTC
GGTATCTTCG CCAGCGTCTT CGCGCGGCTC CTCGACCTCC TCCCGCCGCT CATGCTCGGG
ATCGCCATCG ACGCCGTGTT CTACGAGGAC GCGCTGTTCA GCGAGCAGAT CCCGCTCGTG
ATCCTCCCCG ACGCGTGGCT CCCGACGGGA CAGACCGAAC AGTTCTGGTT CACTATCGCC
GTCATCGGGG CCGCGTTCGG TATCGGGGCC GGCTTCCACT GGATCCGGAA CTGGGGGTTC
AACGCCTTCG CGCAGAACAT CCAGCACGAC GTTCGGACCG ACACCTACGA CAAGATGCAG
CGGCTCAACA TGGAGTTCTT CTCCGACAAG CAGACGGGGG AGATGATGTC CATTCTCTCG
AACGACGTGA ACCGGCTCGA ACGATTCTTA AACGACGGAA TGAACTCGCT GTTCCGCCTC
TCCGTGATGG TCGTCGGGAT CGGCGTGCTG CTGTTCTGGA TAAACTGGCA GCTCGCGTTG
GTCGCGCTCC TCCCGGTCCC GATCATCGGC GGATTCACCT ATCTGTTCAT CAAGATCATC
CAGCCGAAGT ACGCTGAGGT GCGCTCGTCG GTCGGGAAGA TGAACTCTCG GCTGGAGAAC
AACCTCGGCG GCATTCAGGT GATCAAGTCG TCGAACACCG AACCGTACGA GTCCGACCGC
GTCGACGACG TCTCGATGGA CTACTTCGAC GCCAACTGGG ACGCGATCAC GACCCGGATC
AAGTTCTTCC CGGCGCTCCG CGTGCTCGCC GGTATCGGCT TCGTGCTCAC GTTTGTCATC
GGTGGGCTCT GGGTGTTTCA GGACACTCCG CCGGGCCCGT TCACCGGCGA CCTCTCGGTC
GGGATGTTCG TCGTCTTCAT CCTCTACACC CAGCGGTTCA TCTGGCCGAT GGCGCAGTTC
GGGCAGATCA TCAACATGTA CCAGCGCGCC CGCGCCTCCT CCGCGCGGAT CTTCGGGCTG
ATGGACGAGC CGTCGCGACT CGCCGAGGAC CCCGACGCCG AGGATCTGAC CGTCGGCGAC
GGCGACGTGG TCTACGACGA CGTGAGCTTC GGCTACGACG AGGAGACCAT CGTCTCCGAC
ATCGACTTCG CGGTCGAGGG CGGCGAGACG CTCGCCCTCG TCGGTCCGAC CGGTGCCGGG
AAATCGACGG TCCTCAAGCT GCTGCTCCGG ATGTACGATG TCGATGAGGG ATCGATCCGG
ATCGACGGGC AGGACGTGCG CGACGTGACG CTCAAATCGC TCCGCCGCTC GATCGGCTAC
GTCGGGCAGT CGTCGTACCT CTTCTACGGC ACCATCCGCG AGAACATCAC CTACGGCACC
TTCGAGGCGA CCGACGAGGA GGTCCGCGAG GCTGCGGAGG CCGCGGAGGC CCACGAGTTC
ATCAAGAACC TCCCGGAGGG CTACGACACC ATGGTCGGCG AGCGCGGCGT GAAGCTCTCC
GGCGGGCAGC GCCAGCGCGT CACCATCGCG CGAGCGGTGC TGAAGGACCC GGACCTCCTC
ATCCTCGACG AGGCGACCTC GGACGTGGAC ACCGAGACGG AGATGCTGAT CCAGCGCTCG
CTCGACCGGC TCACCGCCGA CCGTACCACG TTCGCGATCG CGCACCGCCT CTCGACGATC
AAAGACGCCG ACACCATCCT CGTGTTAGAG GGCGGCGAGA TCGCCGAGCG CGGCACCCAC
GACGAGCTGT TAGACAACAG CGGACTGTAC GCGCATCTCT GGGGCGTGCA GGCCGGCGAG
ATCGACGAAC TGCCACAGGA GTTCATCGAC CGCGCGCAGG AGCGCACTGC GCGCCTGGTC
GAGGACGCCG AGAGCGACGA CGACTGA
|
|---|
| Protein sequence | MSSAEWEDDD PFEEQRDKIE NPMKRLFLAY GRDYLPQVSV GIFASVFARL LDLLPPLMLG
IAIDAVFYED ALFSEQIPLV ILPDAWLPTG QTEQFWFTIA VIGAAFGIGA GFHWIRNWGF
NAFAQNIQHD VRTDTYDKMQ RLNMEFFSDK QTGEMMSILS NDVNRLERFL NDGMNSLFRL
SVMVVGIGVL LFWINWQLAL VALLPVPIIG GFTYLFIKII QPKYAEVRSS VGKMNSRLEN
NLGGIQVIKS SNTEPYESDR VDDVSMDYFD ANWDAITTRI KFFPALRVLA GIGFVLTFVI
GGLWVFQDTP PGPFTGDLSV GMFVVFILYT QRFIWPMAQF GQIINMYQRA RASSARIFGL
MDEPSRLAED PDAEDLTVGD GDVVYDDVSF GYDEETIVSD IDFAVEGGET LALVGPTGAG
KSTVLKLLLR MYDVDEGSIR IDGQDVRDVT LKSLRRSIGY VGQSSYLFYG TIRENITYGT
FEATDEEVRE AAEAAEAHEF IKNLPEGYDT MVGERGVKLS GGQRQRVTIA RAVLKDPDLL
ILDEATSDVD TETEMLIQRS LDRLTADRTT FAIAHRLSTI KDADTILVLE GGEIAERGTH
DELLDNSGLY AHLWGVQAGE IDELPQEFID RAQERTARLV EDAESDDD
|
|---|
| |