| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_2257 |
|---|
| Symbol | |
|---|
| ID | 4709139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 2479301 |
|---|
| End bp | 2480365 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639856733 |
|---|
| Product | 3-dehydroquinate synthase |
|---|
| Protein accession | YP_001003823 |
|---|
| Protein GI | 121999036 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0337] 3-dehydroquinate synthetase |
|---|
| TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGACAC AATGGGTCGA GCTCGGGGAG CGCAGTTACC CGATCTACAT CGGGGACGGA
GTGCTGGATC AGGGGGTGCT GGCCGAGCAT CTGGTGGCGG ATCGGGCGCT GCTGGTCAGC
AACGAGACCG TGGCACCGCT CTACGCCGAG CGCCTGGCCG TTCCGGGTGC CGAGGTGCAG
TCGGTGACCC TGCACGACGG CGAGCGCTAC AAGACCCTGC AGACCTGTGA GCAGGTCTAT
GACGCCTTGA TCGAGGGGCG CTTCGACCGT TCGGCCACGG TGATCGCCCT CGGCGGTGGC
GTGGTCGGTG ATATGGCCGG CTTCTGTGCG GCTACCTACC AGCGCGGGGT GGGCTACATC
CAGGTGCCCA CGACGCTGTT GGCCCAGGTC GACTCCTCGG TGGGCGGCAA GACCGGGGTC
AACCATCCGC GTGGCAAGAA CATGATCGGC GCCTTCCACC AGCCGCGTGC CGTGGTGGCG
GATACGGGGG TCCTCGCCAC CCTGCCCGAG CGCGAATACA ACGCCGGCCT GGCCGAGGTC
GTCAAGTACG GCCTGATCCG CGATCCCGCC TTCTTCGACT GGCTCGAGGC GCATGTCGAT
GCCCTGCGGC GCCGCGACCC CGAGGCCCTG GCCCACGCCG TGGCCGAGTC GTGCCGCAAC
AAGGCCGAGG TGGTCGCCGC TGACGAGCGG GAGGCCGGTG AGCGTGCGCT GCTCAACCTC
GGCCACACCT TCGGCCACGC CATCGAGACC TACACCGACT ACTGCACCTG GCTCCACGGC
GAGGCCGTGG CGGCCGGGAT GGTCATGGCG GCGCGCATGT CGGTGCGCCT GGGTTGGCTG
CAGCGCAACG GGCTGGAGCG CACCATCGCC CTGCTTGAGG CCTTCGGCCT GCCCACGCGG
CCGCCCGCCA TCCCCGAGGC CCGCTTCCGT GAGCTGATGA GTGTCGACAA GAAGAACCGG
GGTGGCCAGT TGCGCCTGGT GCTCCTGCGC AGTGTCGGCG ATGCCGTGGT CACCGGCGAG
TTTGCCCCGG AGGCGCTGAC CGACACCCTG GTCGAGGCGG TCTAG
|
|---|
| Protein sequence | MRTQWVELGE RSYPIYIGDG VLDQGVLAEH LVADRALLVS NETVAPLYAE RLAVPGAEVQ
SVTLHDGERY KTLQTCEQVY DALIEGRFDR SATVIALGGG VVGDMAGFCA ATYQRGVGYI
QVPTTLLAQV DSSVGGKTGV NHPRGKNMIG AFHQPRAVVA DTGVLATLPE REYNAGLAEV
VKYGLIRDPA FFDWLEAHVD ALRRRDPEAL AHAVAESCRN KAEVVAADER EAGERALLNL
GHTFGHAIET YTDYCTWLHG EAVAAGMVMA ARMSVRLGWL QRNGLERTIA LLEAFGLPTR
PPAIPEARFR ELMSVDKKNR GGQLRLVLLR SVGDAVVTGE FAPEALTDTL VEAV
|
|---|
| |