Gene Hhal_2161 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHhal_2161 
Symbol 
ID4709716 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhodospira halophila SL1 
KingdomBacteria 
Replicon accessionNC_008789 
Strand- 
Start bp2373592 
End bp2374242 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content66% 
IMG OID639856636 
Productchemoreceptor glutamine deamidase CheD 
Protein accessionYP_001003727 
Protein GI121998940 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG1871] Chemotaxis protein; stimulates methylation of MCP proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.847826 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGCTGG GGGCGTTTCG CAACCGCGGC GTTACCGTGC CCGACTGTCT GCCGGGGTTC 
GGGCACATCA ACCGCTACTG GGATCCGGAG CATCAGGTCT TCGCGGCCAA GATCCTGCCC 
GGAGAGTTCT ATGTCACCCG CGGCAATGAG ATGATCGTCA CCACGCTCGG CTCCTGTGTC 
TCGGCCTGCG TTCGGGATCG GCGCCTGGGG GTCGGGGGCA TGAACCACTT CATGCTGCCT 
GTCCGCGGAG GCGATCCGAA CCACTGGGAG GGCGATCCAC TGAGTACCGC GACCCGGTAC 
GGCAATCACG CCATGGAGCA GCTGATCAAC CGCGTCCTCG CCCTGGGCGG TCAGCGCCAG 
GAGCTGGAGG TCAAGCTCTT CGGCGGTGGG CGGGTGCTGG CCGGGGTCAC CGATGTGGGG 
AAACGGAACA TCGAGTTTGC CGAAAGCTAT GTGCGGACGG AGGGTCTGCG GCTGATCGGT 
CGAGATCTGG GTGGCCAGTA TCCCCGGAAG GTGCAGTACT TCCCCGAGAG CGGACGGGCG 
CGGTCGAAGA AGCTCCTGCG CACGCGCAAC GACACCGTCG TGCGCCGCGA GGAGCACTAC 
CTCCACGAGA TCGACGAGCA GCCGGTCTCC GGCGACGTCG ACCTGTTTTG A
 
Protein sequence
MQLGAFRNRG VTVPDCLPGF GHINRYWDPE HQVFAAKILP GEFYVTRGNE MIVTTLGSCV 
SACVRDRRLG VGGMNHFMLP VRGGDPNHWE GDPLSTATRY GNHAMEQLIN RVLALGGQRQ 
ELEVKLFGGG RVLAGVTDVG KRNIEFAESY VRTEGLRLIG RDLGGQYPRK VQYFPESGRA 
RSKKLLRTRN DTVVRREEHY LHEIDEQPVS GDVDLF