| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1893 |
|---|
| Symbol | |
|---|
| ID | 4710687 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | + |
|---|
| Start bp | 2081049 |
|---|
| End bp | 2084006 |
|---|
| Gene Length | 2958 bp |
|---|
| Protein Length | 985 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639856366 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001003459 |
|---|
| Protein GI | 121998672 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0591] Na+/proline symporter
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.426931 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCTTTG ACCTGCTCAC CCTCTTCCTG GTGGGCGTCG TCTACCTGGG GCTGCTCTTC
GTCATCGCCT TCGCCGTGGA CCGGCGCTGG TTCCCGCGCA GCGTGGTCCG CCATCCGGTC
TTCTATGTCT TCGCTCTGGG GGTCTACGCC ACCACCTGGA GCTACTACGG CTCGGTAGGC
TTCGCCGACG AAAACGGCCT GATCTTTGCC ACCATCTACC TGGGCGTCAC CGCGGCCTTC
CTGCTCACGC CGGTGCTCCT CGCCCCCCTG CTGCGCCTGA CCAGCAACCA ACAGCTGACC
TCGGTGGCCG ACGTCTTCGC CTTCCGCTTC TCCAGCCAGT TCGCCGGCAT TCTGGTCACC
GCCATCATGC TCGCCGGCAT CCTGCCGTAC ATCGCCCTGC AGATCCGCGC CGTGGCCGAG
TCGACCCTGG TCCTGACCGG CGGGGGCCAC GATCCTCGGC CGCTGGCCCT GGCCTTCTGC
CTGATCGTGA CGGTGTTCGC CATCATCTTC GGTGCCCGGC ACGTCACCCC GCGGGTCAAG
CACACCGGGC TGGTCGTCGC TATCGGCCTG GAGAGCCTGG TCAAACTGGG TGCCCTGCTG
ATGGTGGCCT GGGTCGCCGT CGACCTAGCC TTCGACGGCC CGGCGGGGCT GTCGGCGTGG
CTCAGCGAGA ACCCGCAACA GCTGGACGAC TTCTACCAGC CGGCGCTGGA GGGCCCGTGG
CTCAGCCTGC TGACCCTGAC CTTCGCCGCC GCCTTCCTGC TGCCACGCCA GTTCCACATC
CTGTTCACCG AGAACCTCTC GCCGCGCAGC CTCACCCGGG CCAGCTGGGC CTTCCCGCTG
ATCCTCCTGC TGCTGGCCCT GGCCGTCCCG CCGATCCTCT GGTCCGGCAC GGCGCTGAAC
ACGGACACCG CCCCGGAGTA CTACGTGCTG GGACTGGCGG CCCTGTCCGG CTCGGAGCCG
CTGACCCTGC TGGTCTATCT GGGCGGCATC TCGGCGGCGA CAGCGATGAT TGTCGTCTCG
ACCCTGGCGC TGTCGTCGAT GACGCTCAAC CACCTGGTGA TGCCGCTGAT CAAGTCGCTG
CCGCACCAGG AGCCGGACCT TTACGCCACG CTGCGCTGGA CCCGGCGATT CCTGATCACC
ATGCTCATCG TCTTCGGGTT CACCTTCTAC GAGCTGCTCG ACCGCACCGA GGGCCTGGTT
GAGTGGGGGC TGATGTCCTT CCTGGCCATG GCCCAGTTTC TGCCCGGGAT CATCGGCGTC
CTCTACTGGC AGCGCGCCAC CGTCTACGGC TTTGTGGCGG GCCTGCTCGG CGGCTCGCTG
ATCTGGCTGG ACACCATCCT GCTGCCGGCG CTGGCCGGCA CCGAGCCGTT CTTCCTGCTC
GGCTTCCCCC AGGCCCGGGA GAGCGCGACC GAAATCTACG GCATCGCCAC CTTCTGGTCC
CTGGCCCTGA ACGGCCTGCT GTTCGTCGGG GTCTCGCTGT TCACCCCCCA GCGCTCCGCG
GAGCGGCAGG CCGCCGAGGT CTGTCGGGAT CAGACGGCAG CCATCGCGCC GGGGACGCTG
CAGGCCGCCT CGCCGTCGCA GTTCGTGATC CAGCTGGCGC CGGTCACCGG TGAAGAGGCG
GCCCGCCAGG AGGTGGACAA GGCCCTGCAC GACCTGGGGC TGGCCTGGAG CGAGAACCGT
CCCGACCAGC TCCGCGCCCT GCGCGATCAG GTCGAGCGCA ATCTCTCCGG CATGATGGGA
CCGATGCTCG CGCGCATGAT CGTCGACAAG CGGCTGCAGC TCGACCGCAC GGCCCGTACC
GCGCTGGCCC ACAACATCCG CCAGATCGAG GAGCGCCTGG AGTCCTCGCG CAACCGCTTC
CGGGGCCTCG CCGCGGAACT CGACCGGCTG CGCCGCTACC ACCGCCAGAT CCTCGAGGAC
CTCCCCCTGG GCGTCGTGGC GGTGACCGCC CACGGCCGCG TGGTGCGCTG GAACACCGCC
ATGCAGGGCC TGTCCGGGAT CTCGGCGAAC ACCGCGCTGG GCTCGCGGAT CTGTGACCTC
CATCCCCCGT GGGATCAGCT GCTGAACCGG TTCCTGACCA TCGAGCAACC GCAGCACCAG
GAGCAGTTCC CGCAGCCCGG CGGCGAGCAG CGCTGGCTGT CGCTGCACAA GACGTGCATC
CGCGAGTCCG GCCGCGGCCG GACCGGCGAC ACCCTGATGA TCATCGAGGA CATCACCCAC
ATCCGCCGCC TGGAGCGCGA GCTGGCCCAC AGCGAACGAC TGGCCTCCAT CGGCCGCCTG
GCTGCGGGCG TGGCCCACGA GATCGGCAAC CCGGTCACCG GCATCGACTC CCTGGCGCAG
AACCTGCGCC ACGAGTCCGA TCCACAGCTC CTGCGCGAGA GCGTCGACGA GATCCTGGAA
CAGACGCGGC GGATCAATAA CATCGTGCAG ACGCTGATCG GCTACGCCCA CGCCGGCAAC
ACCGACGAGC GCACGCCGGA CCCGGTGCCG CTCAGCGAGA CCGTCGAGGA GGCGCGCCGG
CTGGTCCAGT TAAGCAAGCG TGGTCAGGAC CTGGAGATCG ACAACCAGCT CTGGCCCGAA
CTCCAGGTCC GCGGTGATCG GCAACGGCTG GCCCAGGTCT TCGTCAACCT CTTCTCGAAC
ACCGCCGATG CCTGCGGCCC CGGCGGACGG ATCGCGATCT CGGCCCGCCG CTACGGCGAT
CGCGTGCAGA TCCGGGTGGT GGACAACGGC CCGGGCATCC CGGCCGAGCT GGTCGACAAG
GTGATGGAGC CGTTCTACAC CACCAAGCCG GTGGGCCAGG GCACCGGACT CGGGCTGCCG
CTGGTCTACA ACATCGTCAG TGAACAGGGG GGCGAGTTTT CGATCACGGC CGACAACGGG
GGCACCACAG CCTGGATCAC CCTGCCGGTA CTCGACCCCG CGCCGCCGAC CGAGCGCGCC
GAGAGCAAGG AGGAGTAA
|
|---|
| Protein sequence | MTFDLLTLFL VGVVYLGLLF VIAFAVDRRW FPRSVVRHPV FYVFALGVYA TTWSYYGSVG
FADENGLIFA TIYLGVTAAF LLTPVLLAPL LRLTSNQQLT SVADVFAFRF SSQFAGILVT
AIMLAGILPY IALQIRAVAE STLVLTGGGH DPRPLALAFC LIVTVFAIIF GARHVTPRVK
HTGLVVAIGL ESLVKLGALL MVAWVAVDLA FDGPAGLSAW LSENPQQLDD FYQPALEGPW
LSLLTLTFAA AFLLPRQFHI LFTENLSPRS LTRASWAFPL ILLLLALAVP PILWSGTALN
TDTAPEYYVL GLAALSGSEP LTLLVYLGGI SAATAMIVVS TLALSSMTLN HLVMPLIKSL
PHQEPDLYAT LRWTRRFLIT MLIVFGFTFY ELLDRTEGLV EWGLMSFLAM AQFLPGIIGV
LYWQRATVYG FVAGLLGGSL IWLDTILLPA LAGTEPFFLL GFPQARESAT EIYGIATFWS
LALNGLLFVG VSLFTPQRSA ERQAAEVCRD QTAAIAPGTL QAASPSQFVI QLAPVTGEEA
ARQEVDKALH DLGLAWSENR PDQLRALRDQ VERNLSGMMG PMLARMIVDK RLQLDRTART
ALAHNIRQIE ERLESSRNRF RGLAAELDRL RRYHRQILED LPLGVVAVTA HGRVVRWNTA
MQGLSGISAN TALGSRICDL HPPWDQLLNR FLTIEQPQHQ EQFPQPGGEQ RWLSLHKTCI
RESGRGRTGD TLMIIEDITH IRRLERELAH SERLASIGRL AAGVAHEIGN PVTGIDSLAQ
NLRHESDPQL LRESVDEILE QTRRINNIVQ TLIGYAHAGN TDERTPDPVP LSETVEEARR
LVQLSKRGQD LEIDNQLWPE LQVRGDRQRL AQVFVNLFSN TADACGPGGR IAISARRYGD
RVQIRVVDNG PGIPAELVDK VMEPFYTTKP VGQGTGLGLP LVYNIVSEQG GEFSITADNG
GTTAWITLPV LDPAPPTERA ESKEE
|
|---|
| |