| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1851 |
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| Symbol | |
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| ID | 4711268 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | + |
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| Start bp | 2022401 |
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| End bp | 2024032 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639856323 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001003417 |
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| Protein GI | 121998630 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.993809 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCAACG TAGCGACCCG CGGTTTCTTC AGAGGCATGA GCCCCCGGGT GACCGCCATC
TCGACCTTCC TGGTAGCGGC TTTCGCCCTG GCCGGAGCCA TCTGGCCGAA ACACCTGGAG
GCGGTCGTCA CCGGGTGGCG CGAATCGCTG ACCCCGTTCC TGCAGTGGTA CTACGTGCTG
GTGGTGGCCG CCTTCCTGCT ACTGGTGATC TGGCTGGGCA CGGGGCGGTT CAAGAATGTG
CGTCTGGGCC AGGATCACGA GGTGCCGGAG TTCCGTACCT TCTCCTGGCT GACCATGCTG
TTTGCCGCAG GCATGGGGGT GGGCCTGATC TTCTGGGCCG TCGCCGAACC CATCTCCCAC
TTCGACAGCA ACCCGTTCAC AGTCTCCGGC GACACCACCG AAGCCGCCGA CACGGCGCTG
CGCCTGGCCT ACTTTCACTG GGGCCTCAAC GGCTGGGCCG TCTTCTCCCT GGTGGCGCTG
ATCCTCGCCT ACTTCAGCTT CCGCCGCGGC CTGCCGCTGA CCATGCGCTC GGCCTTCTAC
CCGCTGATCG GTAAGCACAT CCACGGGCCT TGGGGCGATG CCGTGGACAT CCTGGCGGTG
CTGGCCACCG TCTTCGGCAT CGCCACCACC CTGGGGCTCG GCATCCAGCA GCTGAACACC
GGCATCGGCG AACTTACCGG GATCACGGCG GGCACCACCG GCCAAATCGC CATCGCTATC
ACCGTGATGG GGATCGCCAC CATCTCGGTG CTCTACGGCG TGCAGTCCGG GGTCCGCCTG
ATCAGCGAGG CCAACTTCTG GATGAGCGCG GCAGTGCTGC TCTTCTTCCT GCTCTGGGGC
CCCACCCAGT ACCTGCTGGC GCTGATCGTG CAATCCACCG GCGACTACCT GCAGAACCTG
TTTACCCTCT CGTTCCACAC CCATGCCAAC GCCCTTGGCG ACTGGCAGGC GGAATGGACC
CTCTTCTACT GGGGGTGGTG GCTGGCCTGG GCCCCCTTCG TCGGGATCTT CATCGCCCGC
ATCTCGCGGG GGCGCAAGCT GCGCGAGTTC GTCATGGGCG TGCTGCTGGT GCCCACCGGC
ATCACCATCG TCTGGATCGG GCTATTCGGC GGCAACGCCA TCCACATCGA GCTCTTCGGC
CCCGGCGGGG TCGTCGACGC CACCCGCGAG GAGGTCAGCA CCGCGGTCTT CCGAACCATC
GAGTTGATGG ACGTCGGCAT CTGGGCCACG GCGGCCTCGA TCCTCGTCAC CGTGCTCATA
GCCACCTATC TGATCACTTC CGCCAACGCC GGCATCCTGG TCACCCAGAC CCTGCTGTCC
AACGGTTCGA CGGAGATCTC CCGGCTGCAC ACCGTGATTT GGGGGACCGT CATCACCCTG
GTGACCATCG TGCTGCTGAC CGCCGGGGGC CTGACTACCC TCCAGGGTGC GGTGATCGCC
GCGGCAGTGC CCTTCTCCTT CATCATCATC GGCATGGTGG TGGGACTGCT CAAGGCCCTG
GAGCAGGAGG CCTTCGCCCC GCGGCCGGGC GAGCGCAGCG GCGCACCCAT GGAGCCCTGG
GCCCAGGTCG AGTCGGACTG GCACACCAGC GAAACCCACA CCGACACGGC CACCGACCGG
ACGGAGGACT GA
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| Protein sequence | MFNVATRGFF RGMSPRVTAI STFLVAAFAL AGAIWPKHLE AVVTGWRESL TPFLQWYYVL
VVAAFLLLVI WLGTGRFKNV RLGQDHEVPE FRTFSWLTML FAAGMGVGLI FWAVAEPISH
FDSNPFTVSG DTTEAADTAL RLAYFHWGLN GWAVFSLVAL ILAYFSFRRG LPLTMRSAFY
PLIGKHIHGP WGDAVDILAV LATVFGIATT LGLGIQQLNT GIGELTGITA GTTGQIAIAI
TVMGIATISV LYGVQSGVRL ISEANFWMSA AVLLFFLLWG PTQYLLALIV QSTGDYLQNL
FTLSFHTHAN ALGDWQAEWT LFYWGWWLAW APFVGIFIAR ISRGRKLREF VMGVLLVPTG
ITIVWIGLFG GNAIHIELFG PGGVVDATRE EVSTAVFRTI ELMDVGIWAT AASILVTVLI
ATYLITSANA GILVTQTLLS NGSTEISRLH TVIWGTVITL VTIVLLTAGG LTTLQGAVIA
AAVPFSFIII GMVVGLLKAL EQEAFAPRPG ERSGAPMEPW AQVESDWHTS ETHTDTATDR
TED
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