| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1715 |
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| Symbol | |
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| ID | 4709422 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 1877432 |
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| End bp | 1879681 |
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| Gene Length | 2250 bp |
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| Protein Length | 749 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639856183 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001003281 |
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| Protein GI | 121998494 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCGAAG ACGAGCGGAG AACCCTTTCA CCCGAGGCCC TGCGGGAAGC GGCGCGTCGG
CGTCTGGAGC GGAGGGTGAC GGACGTCTCC GACTGGAGCC GTGCGGATAC CCAGTCCCTG
GTGGCGGAGC TGGAACTGCA CCAGCAGGAG CTGAGGATCC AGAACGAGGA GCTGCAGCAG
GCTCGAGACC GACTGGAAAC CGCCCTAGAC CGCTACCACG ACCTGTTCCA GCGGGCTCCG
GTGGGTTATC TCCTGCTGGA CGACGAGGGC CGGATCTGGG AGGCCAATCG GGCGGCCGCG
GATCTCCTGG CCCCGGGGGG CGATCTGACG GGCCAGCTCC TCTCTGATTT CGTGGCGGTG
GATGCCCAGG ATGCGCTCTA CCTGCACTGG CGCGCTCTGA CTGCTGCTCG AGCCCCACAG
GCCGTCGAAC TGACCCTGGC CTGGGCGGAA GGAGCCTCCT GCGCGGTGCG GATGGAGAGC
TCGGTGGAGC CCACCGCCGA TCGGAGCCCC TGCCGGTTCC GATGTGCCCT GATGGATATT
ACGGAGCGTC GGCGCTCGGA GGAGCAGCTT CGGATCGCCG CCCGCGTGTT CGAGGATGCC
GGCGACGCGA TCGTGGTGAC GGACCCAGAC GGTCACGTCC AGACCATTAA CAACGCCTTT
ACCCGAATCA CGGGGTATAC CGAGGGAGAG GCCCTGGGCA ACACCGTGTG TGCCCTGCTC
GACTCCGGAC GGCACAGCGA GGCCTTCCAT AAGGAGAAGC AGGAGAGCCT GGACCGTTCA
GGCTACTGGC AAGGCGAGAT CTGGCACCGC CGCAAAGGCG GCGAGCTCTA CCCGGAGTGG
CTCACCATCA ACCGTATCGA TGACGCCACG GGCCAGCCCC AGCACTTCGT GGCGGTCTTT
TCGGATATCA CTCAGCTTAA GGATGCCCAC AGCAGGAGCG AGTACCTGGC CAACCACGAC
CCCCTGACCG GGTTGCCCAA CCGCAGCCTG TTCCAGGACC GGCTTCAGCA GGCTATTGCT
CAGACCCAGC GCCATGAGGG GCAAGTGGGT CTGATGTTCC TGGATCTGGA TCACTTCAAA
ACCATCAATG ACACCCTCGG GCACGAGGTG GGGGATGAGC TCCTGGTCCA GGTGGCTGAG
CGACTGGGCG AACTGGTGCG GGATGTGGAT ACGGTCGCGC GGATCGGTGG CGACGAGTTC
ACCGTGGTGC TCACCGATTG CGACCCCGAG GAGGTTGGAT CCATTGCGCA GCGCCTAGTG
GAGGGCCTCG GTGGTACCTT CGTGGTCGAT GGCCGGGAGC TGCAGGCCAC GCCCAGTGCC
GGGTTGGCCT TGTATCCGCG CGATGGTGAG GATGTGCACA CCCTGTGCAA GGCGGCCGAT
ATGGCCATGT ACCGGGCCAA GGAGGATGGC CGCAACCGGC TGCGGCTGTG CGAGTCTGGG
TTGCACCAGC GTCTCCTTAA GGATACTGCC CTGGAGGAGG CGCTGCGCCG GGCCCTCACG
CAAGGTGAGC TGCGCCTCGT CTATCAGCCC CAGTTCGACG CCAGCGACCC CGGCCGGGTG
GTGGGGGCGG AGGCCCTGTT GCGTTGGCAC GACCCCGCAT CCGGACCGAT CAGTCCGGGG
CGGTTCATCC CCATTGCTGA GCGTTCCGAT CTGATCCTGG AGCTGGATCG ACGCGTGGAG
GAGCTATTGT GTGAACAGCT GAATACATGG TCGGCAGGCC ATGCGCCCCC TGCTCCCATC
TCGTTCAATG TCTCGGCCAA GAGCTTTCGG CAGGGGCATT GGACCAAGCG GCTCTTCCGG
ATCCTGTCTC GCTACGGCGT TGCCGCCGAG CAGCTCCAGG TGGAGTTCGC GGAGGGTACG
CTCTCTGAGC GTGCCGGGGT CGTCCCGGAG GAGATCCGTC GGCTCCATGA GGGTGGCATC
GCCCTGGCCA TCGACGATTT CGGGACTGGC TTCACCTCCT TGGTGAACCT CAAGCAACTC
CCGCTGGCCG AACTCAAGAT CGACCAATCC TTCGTGGCTG GACTGGGTCA GGATGAGGAC
GCCGAGGCGA TCGTCCGGGC CAGCCTCGCC GTGGCCGAGG CGATGGGGCT GAGGACTGTA
GCTGAGGGCG TGGAGACCCA GCGGCAGTTG ACCTGGTTGC AGGAGCAGGG CTGCCAACGC
ATCCAGGGCT CCCTCCTGAG CGCCCCCCTC GAAGCCGAGG ATTTCGAGGC GCTGATCCGG
GGCACACAAA AGCCCCCGCA ATCACACTGA
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| Protein sequence | MGEDERRTLS PEALREAARR RLERRVTDVS DWSRADTQSL VAELELHQQE LRIQNEELQQ
ARDRLETALD RYHDLFQRAP VGYLLLDDEG RIWEANRAAA DLLAPGGDLT GQLLSDFVAV
DAQDALYLHW RALTAARAPQ AVELTLAWAE GASCAVRMES SVEPTADRSP CRFRCALMDI
TERRRSEEQL RIAARVFEDA GDAIVVTDPD GHVQTINNAF TRITGYTEGE ALGNTVCALL
DSGRHSEAFH KEKQESLDRS GYWQGEIWHR RKGGELYPEW LTINRIDDAT GQPQHFVAVF
SDITQLKDAH SRSEYLANHD PLTGLPNRSL FQDRLQQAIA QTQRHEGQVG LMFLDLDHFK
TINDTLGHEV GDELLVQVAE RLGELVRDVD TVARIGGDEF TVVLTDCDPE EVGSIAQRLV
EGLGGTFVVD GRELQATPSA GLALYPRDGE DVHTLCKAAD MAMYRAKEDG RNRLRLCESG
LHQRLLKDTA LEEALRRALT QGELRLVYQP QFDASDPGRV VGAEALLRWH DPASGPISPG
RFIPIAERSD LILELDRRVE ELLCEQLNTW SAGHAPPAPI SFNVSAKSFR QGHWTKRLFR
ILSRYGVAAE QLQVEFAEGT LSERAGVVPE EIRRLHEGGI ALAIDDFGTG FTSLVNLKQL
PLAELKIDQS FVAGLGQDED AEAIVRASLA VAEAMGLRTV AEGVETQRQL TWLQEQGCQR
IQGSLLSAPL EAEDFEALIR GTQKPPQSH
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