Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hhal_1388 |
Symbol | |
ID | 4711224 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhodospira halophila SL1 |
Kingdom | Bacteria |
Replicon accession | NC_008789 |
Strand | - |
Start bp | 1496903 |
End bp | 1500841 |
Gene Length | 3939 bp |
Protein Length | 1312 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 639855855 |
Product | ATP-dependent helicase HrpA |
Protein accession | YP_001002957 |
Protein GI | 121998170 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1643] HrpA-like helicases |
TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGGTGGCG TACCGCGCCA GCTTCGTGAG CTGCGCCAAC GTATCGAGGG CGCCTTCGGC CCGCAGCGAC CGCCGCTGCG TCGGCGTCTG GCCGGGCTGG AGCGCTGTGC CCGGCAGGGT CGCCCCTTCG ACCGGGGAGT GGCCCGCCTG GAGCAGGATC TGGCCGACTC CGAGGCCGAG GTTACCCGGC GCCGGAGTGA GGCGATCGCC CTCGAGTACG ACCCTGATCT GCCGGTGGTT CAGCGCCGCG AGGAGCTGCT CGAAGCGCTG CGTGAGCACC AGGTGGTGGT GGTCTGCGGG GCCACCGGCT CCGGGAAGTC GACCCAGCTC CCCAAGATGT GCATGGAACT CGGTCTCGGC ACCCGGGGGC TGATCGGCCA CACGCAGCCC CGGCGCATCG CCGCCCGGGC GCTCGCCGAG CGGCTGGCCG AGGAGACCGG AACCCGGGTC GGCGAGACGG TAGGCTACAA GGTCCGCTTT ACCGACCAAG TCGGTGAGCA GAGTCGGGTC AAGCTGCTCA CCGACGGCAT GCTGCTGGCC GAGATCCAGT CCGATCGACA CCTGGACGCC TACGACACCC TGATCATCGA TGAGGCCCAC GAACGCAGCC TCAACATCGA CTTCATCCTC GGCTACCTGA AACGCCTCCT GCCGCGTCGT CCGGATCTGA AGGTCATCGT CACCTCGGCG ACCATCGACC CGGAGCGTTT CGCCGAGCAC TTCGACGGAG CGCCGGTGCG GGAGGTCTCC GGGCGGACCT ACCCGGTGGA GATCCGCTAT CGCCCTTATG AGGAGCGCGA AGGCGTCGAG CAGCCCCAGG CGGTGACCGA GGCGGTCCAC GAGCTCGCCC GGGAAGGCCG TGGCGACGTG CTCGTCTTCC TCTCCGGGGA GCGGGAGATC CGCGAGTGCG CCGAGGCGCT GCGCAAGAAC CCGCCCCGGG GTACCGAGAT CCTGCCGCTC TACGCCCGAC TCTCCAGCGC CGAGCAGCAG CGGGTCTTCC ACCCCGGCTC CGGGGGGCGG CGGGTGGTGC TCGCCACCAA CGTGGCGGAG ACGTCCCTGA CCGTCCCCGG GATCCGCTAC GTGGTGGATA CCGGGCGGGC CCGGATCAGC CGCTACAGCC ACCGGACGAA AGTCTCCCGT CTGCCGGTGG AACCGATTGC TCAGGCCTCC GCGGATCAGC GCGCCGGCCG GTGTGGCCGC GAGGCCCCGG GTATCTGCAT CCGCCTCTAC AGTGAGGAGG ATTACGAGAG CCGGCCCCGT TACACCGATC CGGAGATCCT GCGGACCAAC CTCGCCGGCG TCATCCTGCA GATGAAGGCC ATGGGTCTGG GCGACATCGA GCGCTTCCCC TTCGTCGAGC CCCCCGAGCG GCGCTATATC AACGATGCCC TGCGCCTGCT CTTCGAGCTC GGGGCGGTGG ATGAAGGTCG CGAACTCACG GACCTGGGCC GCCGTCTGGC GCGGATCCCG GCGGACCCGC GCATCGGCCG CATGCTCCTC GCTGCCCGCG AGGCCGGTGT CCAGCGCGAG ATCCTGATCA TCGCTGCGGC ACTGTCCGTG CAGGATCCCC GCGAGCGGCC CATGGAGGCG CAGGAGGCCG CCGATCGGGC CCACGCGCGG TGGCACGATC CGAAGAGCGA TTTCGCCGCC CTGCTGCGAC TCTGGGACGA TTACCAGGCG CAGCGCCGCG GCCTTTCCCG GCGCAAGCTC ACCCAGTGGT GCCGCGAGCA TTTTCTGGCC CCGCAGCGCA TGCGCGAGTG GGCCGATATC CGACGGCAGT TCGCCGAGAT GCTCAAGGAG GCGGAACGCC TCCGCAGCAG CGGGGCCGGG GAGGCGCAGG ACGCCACGCC TACGGCCCGG ACCGCGGAGG CAGAGTTCCC CTACGAGGCG GTCCACCGGG CCCTGCTCAC CGGCCTGCTC AGCCAGGTGG CCACCCTCCA CGAGGACCGC ATCTACCTGG GGGCACGCGG CGTCAAGCTG CAGATCTTCC CCGGTTCCGT GCTGGCACGG CGCCGGCCGA AGTGGATCGT CGCCGCTGAG CTGATGGAGA CCAGTCGCCT CTTCGCCCGC ACGGTCGCCG AGATCCGCCC GGAGTGGGTG GAACAGCTTG CCGGCCATCT GGTCTCGCGC AGCTACGGTG AGCCGCGCTG GGAGAAGCGC GCCGGGCGCG TCGTTACAGA AGAGCAGGTG AGCCTGTTCG GACTGACCCT GGTCGCCGGA CGCAAGGTCG ACTACGGGCG CATCGACCCG CAGGAGGCGC GGCGGTTGTT CCTGCGCGAT GGTCTGGTCG CCGGCGAGAT CCGCACCCGT GGCGCGTTCC TGGCCCACAA CCAGGCCCTG GTCGACGAGG TGGAGCGCCT CGAGGCCAAG GCGCGGCGCC GTGACGTGCT CGTCGACGAG GAGCAGCTGG TGGCCTTCTA CGACGCCCGC CTCCCGGCGC ACATCCGCGA CGCTCCGGCC TTTGAGCGCT GGCGGCGGCG GGCGGAACGC GACGACCCCC AGTGCCTGCA CATGACCCGC GAGGCGCTGA TGCGCCGGGA GACGGACGAC ATCTCGGCGG AGCAGTACCC GGATCGGCTG ACGGTGGCCG GGGTGGAGGT GGCCCTGGAG TACCACCTGG AGCCGGGCAG CGAGCGGGAT GGGGTGACCG CGCTGATCCC GGTGGCGGCG CTCAACCAGC TGCCGCCCGA GCCCTTCGAA TGGCTGGTGC CGGGGCTGCT GCAGGAGAAG GTGACCGCGC TGATCCGCGG ATTGCCCAAG GCCCTGCGCA AGCACTTTGT GCCGGCGCCG GATTTCGCCC GCGCCGTGCT CGAGGCCGTG CCCCATCGCG AAGGGGCGCT GACCGACGCG GTGGCCCGCC ACCTGCAGCG TGTCACCGGG GTGGAGCTGC CGCCGGGTGC CCTGGAGGCC GTGGATCTGC CGGAGCACCT GCGTATGGCC TTCCGTGTGG TGGATCGCGA CGGCCACACC CTGCAGGAGG GGCGTGACCT GCTCGTCCTG CAGGCGGGGC TGAGCGAGGC GGCCAGCGAG GAGTTTGCCG TCGCCGGCGG TGGCAGCGGG GCCGGCCCCG GTGCCGAGTG GCACCGCGAA GGCATCACCA CCTGGGACTT CGGGCCGCTG CCGGAATCGG TGGTACTGGA AGAGGGCGGT GTCCGCTTCC ACGGGTACCC AGCGCTGCGG GACGACGGCG ACTCGGTGAC GCGGCTCCTG CTCGATGCTG CCGAGCCCGC CGCGGCGCAG ACCCACGCCG GGGTGCGCCG GCTGTTCATG CTGGCGTTGC CGCAGCAGGT GCGGGCGCTG CGCAAGCTCG ATGAACTCAA GGCCCTGCGG TTGAAGTACC GCGGTCTGGG CAGCGATGAC GAGCTGCGCG ACGCGCTGCT GCGGGCGGTC TTCGACCGCT GTTTCCTCGC CGACGGGCTG CCCCGGGATG CCGACACCTT CGAGGACCGC CTGGCCGTCG GGCGTGGCGA ACTGGTGCCG CGCGCCCAGT CGCTGTGCGC CGCCCTGGAC GACGTCCTGA CCCGTTACCA GTCGCTGCGC AAGGCGCTGA AACAGCTGAA CAGCCCGGCG TTGCTCGAGA GCCTGCGGGA TGTCGACGAG CACCTGAACA GCCTGGTCTA CCCCGGCTTC CTGGAGGACC TCCCCCCGCA GCGCCTCGAC GAGTTGCCGC GCTACCTGCG CGGCCTCGAG CGCCGGGTCG AGAAACTCAG ACTCGACCCG GCCAAGGATC GCGCCCCGCT GCGCACCATC CGTCCCTGGC ATGAGCGGGT GCACCAGCGT CTGGCCGCCC GGGCCGAGCG CGGGGTGCCG GATCCGGTCC TGCAGCGACT GCGCTGGATG CTGGAGGAGT ACCGGATCTC GCTGTTCGCC CAGGACGTGG GTGCGCGGGA GAAGGTCTCG GAAAAGCGCC TCCAGGAACT CTGGCGGGAG GTGGCGTGA
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Protein sequence | MGGVPRQLRE LRQRIEGAFG PQRPPLRRRL AGLERCARQG RPFDRGVARL EQDLADSEAE VTRRRSEAIA LEYDPDLPVV QRREELLEAL REHQVVVVCG ATGSGKSTQL PKMCMELGLG TRGLIGHTQP RRIAARALAE RLAEETGTRV GETVGYKVRF TDQVGEQSRV KLLTDGMLLA EIQSDRHLDA YDTLIIDEAH ERSLNIDFIL GYLKRLLPRR PDLKVIVTSA TIDPERFAEH FDGAPVREVS GRTYPVEIRY RPYEEREGVE QPQAVTEAVH ELAREGRGDV LVFLSGEREI RECAEALRKN PPRGTEILPL YARLSSAEQQ RVFHPGSGGR RVVLATNVAE TSLTVPGIRY VVDTGRARIS RYSHRTKVSR LPVEPIAQAS ADQRAGRCGR EAPGICIRLY SEEDYESRPR YTDPEILRTN LAGVILQMKA MGLGDIERFP FVEPPERRYI NDALRLLFEL GAVDEGRELT DLGRRLARIP ADPRIGRMLL AAREAGVQRE ILIIAAALSV QDPRERPMEA QEAADRAHAR WHDPKSDFAA LLRLWDDYQA QRRGLSRRKL TQWCREHFLA PQRMREWADI RRQFAEMLKE AERLRSSGAG EAQDATPTAR TAEAEFPYEA VHRALLTGLL SQVATLHEDR IYLGARGVKL QIFPGSVLAR RRPKWIVAAE LMETSRLFAR TVAEIRPEWV EQLAGHLVSR SYGEPRWEKR AGRVVTEEQV SLFGLTLVAG RKVDYGRIDP QEARRLFLRD GLVAGEIRTR GAFLAHNQAL VDEVERLEAK ARRRDVLVDE EQLVAFYDAR LPAHIRDAPA FERWRRRAER DDPQCLHMTR EALMRRETDD ISAEQYPDRL TVAGVEVALE YHLEPGSERD GVTALIPVAA LNQLPPEPFE WLVPGLLQEK VTALIRGLPK ALRKHFVPAP DFARAVLEAV PHREGALTDA VARHLQRVTG VELPPGALEA VDLPEHLRMA FRVVDRDGHT LQEGRDLLVL QAGLSEAASE EFAVAGGGSG AGPGAEWHRE GITTWDFGPL PESVVLEEGG VRFHGYPALR DDGDSVTRLL LDAAEPAAAQ THAGVRRLFM LALPQQVRAL RKLDELKALR LKYRGLGSDD ELRDALLRAV FDRCFLADGL PRDADTFEDR LAVGRGELVP RAQSLCAALD DVLTRYQSLR KALKQLNSPA LLESLRDVDE HLNSLVYPGF LEDLPPQRLD ELPRYLRGLE RRVEKLRLDP AKDRAPLRTI RPWHERVHQR LAARAERGVP DPVLQRLRWM LEEYRISLFA QDVGAREKVS EKRLQELWRE VA
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