| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1372 |
|---|
| Symbol | |
|---|
| ID | 4711386 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | + |
|---|
| Start bp | 1479652 |
|---|
| End bp | 1480548 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639855839 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001002941 |
|---|
| Protein GI | 121998154 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4235] Cytochrome c biogenesis factor |
|---|
| TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGGAG CCTTCGTCGG GGCCATTGTG GTCCTCTGCA TCATCGCCTT GATCTTCGTG
CTCTTCCCGC TGCTGCGGGA TGTGGCACAG ACGCGGACGC AATCCCGCCG CCAGATCAAC
GCGGCGATCC ACCGGGACCG CATCCGCGAG CTCGACCAAG ACCTGGATAA CGGCACGCTG
AGCCGGGCGC AGTACGATGC GGCCATCGCC GACCTGGACC GGGATCTGGT CCAGAGCGGG
GCCATCGACA GCGAGGAGGA TCAGGCCGGT TATATGCCCC GGGCCCGCCG CGGCGTGGTC
GCCGCGGCGG CCACGCTAAG CGCGGTGGCG GTGCCGGTGC TGGCCCTGTC CATGTACCAC
TCCCTGGGCG ACGAGCGTGC CTTCACCCAG GCCGGCACGC CCACCACGCC GGATCGCCAG
CAGCAGGGCG AGGCCCCGGG GCAGCCACAG CAGCACGATC CGGACGAGAT CGAGGCCATG
GCGCAGCAAC TGCGCGAGCG CCTGGAACAG AGCCCCGACG ATCCGACCGG GTGGGTGCTC
TACGGCCGCA CCATGATCTA CCTGGAGAAC CTGGACGAGG CCGAGAACGC CTTCCGGCGG
GCCCTGGACC TGGGGGCCGA CGACGACCCG AGCCTGCTCG CCGAGTACGC CGATATCCTG
GCGGCCACCA CCGGCAATCT CCAGGGCGAA CCCATGGAGT ATCTGGAACG GGCGCTGGAG
ATCGATCCGG GCCATGTCCG GGCATTGTGG CTGGCCGGAA CGGCGGCCTA CAACCAGGCG
GACTACGATC AGGCGCGCTC CTACTGGGAG GATCTCTTGG AGGTCGTGCC GCCGGAGTCC
CAAGAGGCCC AGGCCATCCA GTCGAACCTG CGACAGCTCC CCGAAGGCGA GGGCTGA
|
|---|
| Protein sequence | MSGAFVGAIV VLCIIALIFV LFPLLRDVAQ TRTQSRRQIN AAIHRDRIRE LDQDLDNGTL
SRAQYDAAIA DLDRDLVQSG AIDSEEDQAG YMPRARRGVV AAAATLSAVA VPVLALSMYH
SLGDERAFTQ AGTPTTPDRQ QQGEAPGQPQ QHDPDEIEAM AQQLRERLEQ SPDDPTGWVL
YGRTMIYLEN LDEAENAFRR ALDLGADDDP SLLAEYADIL AATTGNLQGE PMEYLERALE
IDPGHVRALW LAGTAAYNQA DYDQARSYWE DLLEVVPPES QEAQAIQSNL RQLPEGEG
|
|---|
| |