Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hhal_1257 |
Symbol | |
ID | 4711121 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhodospira halophila SL1 |
Kingdom | Bacteria |
Replicon accession | NC_008789 |
Strand | + |
Start bp | 1363268 |
End bp | 1366711 |
Gene Length | 3444 bp |
Protein Length | 1147 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 639855730 |
Product | transcription-repair coupling factor |
Protein accession | YP_001002834 |
Protein GI | 121998047 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.230651 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTTGCTCG GCGACCTGCC CCTCCCCCAA CGTCCCGCCG AGCGGCGGGA CTGGTCCGGG CTGCTCGGCG CTGCCCAGCC GCTGGCCATC GCCGAGGCCG CCCGGCAGCA CGACGGCCCA GTCATCGCCG TTACCGGGAC GCCGCAGCAG GCCGCCGCCT TGCAGGAGGC GGTCGGCTTC TTCCTCGGCG ATGACGTGCC GGTGCTCGGT TTCCCGGACT GGGAAACCCT GCCCTACGAT GTCTTCTCCC CGCATCAGGA CATCATCTCG GAGCGCCTGC TCGGGCTCTA CCGCCTGCCG GCGATGACCC GGGGCGTGCT GGTGGTCCCG GCGGCCACGC TCATGCATCG CTTACCGCCG CGCGGCTGGT TAGAGGGCCG GTCGCTGATG CTGCATCCGG GCGACCGATT GGAGATCGAG CCCATGCGCC GCCGCCTGGA GGCCGCCGGC TATCGGTGCG TGCCGGAAGT AGGCGAGCAT GGCGAATTCG CGGTGCGCGG CGCCCTGCTC GACCTCTTCC CCATGGGCGG CGAGACGCCG TATCGCATTG ACCTGTTCGA CGACGAGGTG GAGAGCCTGC GCCGCTTCGA CCCGGAGACT CAGCGCACCA CGGATCAGGT CGATGCCATC GAGCTGCTGC CGGCCCGAGA ATTCCCGACG GACGAAGGCG GCATCACCCG TTTCCGCCAG GCATTCCGCG CCGAGTTCGA GGGCGATCCA GCGCGCAGCT TCCTCTATCG CGCCGTCAGC GAGGGCCGCA TTCCCGGCGG GATCGAATAC TACCTGCCGC TGTTCTTCGA AGAGACGGCC ACGCTGTTCG ACTACCTGCC CGAGGGCACC CTGGCCATCC GTCTCGAGGG CACCGACGCC ACTGCAGACG GTTTCTGGCA GCAGGTCCAG GACCGTTACG AACAGCGCAC CGGAGACATG GATCGCCCGC CCTTGCCTCC GCGACGCGTC TTCCTCGACG GGGACGAGCT GCGCGCCGGG CTCAACCGCC GCCCGCAGGT GGTCCTACAC GGCGAGCCGG GGCGCGGGAG CGACGCCGAC GTCGACGCAC TCCCCGAGCT GGCAGCTCGC CCGCAGGCGG ACCGACCGTT GGAGCGACTC GAACAGTTCC ACGCCGGCTA CCCGGGGCGG ATTCTGTTCA CCGCCGAGAG CGCCGGACGT CGGCAGGGGC TGCAGGAACG ACTGACCCGG TCCGGGATCG AGGCCCGATC GGTTCAGGGT TGGCGCGACT TCCTCGACGG CGACGTGCCG GCGGCCATCA CCGTCGCGCC GCTGGAGACA GGCGCGCGCA TCGACGGCAT CGCCATCATC CCGGAGAGCG CACTCTACGG CGAACGCGCT CGACAGAGCC GGCGACGCCG CTCGAGCGCC TCGACGGACC CGGCAGCGGT CATCCGCGAC CTCTCCGATC TGCACGAGGG CGCCCCGGTC GTCCACGAGG ACCACGGGGT GGGCCGCTAT GTCGGCCTGC AGAGCCTCAG CGTGGGGGAT GTCACCACCG AGTTCCTCAC CCTGGAGTAC GCCGGCGGTG ACAAACTGTA CGTGCCGGTC TCGGCTCTGG ATCGCATCTC CCGCTACACC GGCGCCGACG CCGACGAGGC TCCTCAACAC CGCCTGGGCA GTGATCAGTG GGACAAGGCG CGCCGCCATG CGGCCAAGCG CGCCCGCGAT GTCGCCGCCG AATTGCTCGA TCTTTACGCG CGGCGTCAGG CCCGGGCCGG CGATGCCTGC CTGTTCGATG ACGAGGCCTA CGAAGCCTTT GCGTCCGCCT TCCCCTTTGA GGAGACCCCG GACCAACAGG CCGCCATCCA GGCCGTCCTC GATGACCTGC GCTCCGACCA GCCCATGGAC CGGGTGGTCT GCGGCGATGT CGGCTTCGGC AAGACTGAGG TCGCCATGCG CGCGGCCTTC GCCGGCGTTC AAGCGGGGCG ACAGGTGGCC ATGCTGGTGC CGACGACCCT GCTGGCCCAG CAGCACTATC AGAACTTCGC CGACCGCTTC GCTGACTGGC CGGTGCGGAT CGAGTCGCTG TCGCGCTTTA CCGGCAAGAA GGGCAACGAG AAGACGCTGG CACGGATTGC CAGCGGCGAG GCCGACGTGG TCATCGGCAC CCACAAGCTG CTCGGCAGTG AGGTCCAGTT CAAGAACCTG GGCCTGGTCA TCATCGATGA GGAGCAGCGG TTCGGGGTCC GGCAGAAGGA ACGGCTTAAG CGACTGCGCG CCGAGGTCGA TGTCCTGACC CTCACCGCCA CGCCGATACC GCGCACCCTG AACATGTCCA TGGCGGGGAT CCGGGATCTG TCCGTCATCG CCACCCCCCC GGAACGCCGC CTGGCGGTGA AGACCTTCGT TCAAGAGTGG AGCGATGGTC TCATCCGTGA GGCGTGTCAG CGGGAGCTCC AGCGCGGCGG GCAGGTCTAC TTCCTCTACA ACGACGTGAA GTCCATCGAG CGGACTGCCA ATCAGCTGCG GGACCTGATG CCGGAGGCAC GCATTGGCGT CGCCCACGGC CAGATGCGCG AACGGGAGCT CGAGCAGGTG ATGCTCGACT TCTACCACCA GCGCTTCGAT ATCCTGGTCT GCACGACAAT CATCGAGTCG GGGATCGACA TCCCCACGGC CAACACCATC ATCATCCACC GGGCGGACCG ATTCGGGCTG GCCCAGTTGC ACCAGCTCCG CGGTCGCGTG GGGCGCTCCC ACCATCGCGC CTATGCCTAT CTACTCGCGC CGCCGCCGAA CGCAATGACC GCCGACGCGC TTAAACGGCT GGAGGCCATC TCGCAGCTCG AGGATCTGGG CGTTGGATTT GCCCTCGCCT CCCACGACCT GGAGATCCGC GGCGCCGGCG AGCTGCTCGG TGATGAACAG AGCGGGCAGA TCCAGGAGGT CGGGTTCACG CTCTACAGCC AGCTGCTGGA ACGGGCAGTC AAAGACCTCA AGGCCGGGCG GGACCCCGCT CCGGAAGCCG AGCTCGACAC CGGCGTGGAG GTCGATCTGC GCCTGTCCGC GCTGCTCCCG GCGGATTACC TGCCGGACGT ACATACCCGC CTGGTTCAGT ACAAACGGAT CAGTAGCGCC CGCAGTGATG CCGAGCTCGA GGAGCTGCAG ATCGAGATGA TCGACCGCTT CGGGCTGCTG CCCGATGCGG CGCGCAACCT CTTCCGCACG GCCTCTCTCA AACTCCGGGC CGAGGCGCTG GGCATCCGCA AGGTCGAGGC GGGCCCCTCC GGCGGCACGA TCCACTTCGG CCCGCAGCCG CAGATCGATC CCGGGCGCCT GGTGCAGATG GTCCAGCAGG AACCGGGCAA GTACCGCCTG GACAATCAGC AGCGGCTGCA CCTCAGCGAT GACCTGAGCG ACGAGACGGC CCGATTCGAG GCGATGGAGC GGCTTCTGGA GAGACTCCAC GCCAGCGAGG AGGTAGCGGG ATGA
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Protein sequence | MLLGDLPLPQ RPAERRDWSG LLGAAQPLAI AEAARQHDGP VIAVTGTPQQ AAALQEAVGF FLGDDVPVLG FPDWETLPYD VFSPHQDIIS ERLLGLYRLP AMTRGVLVVP AATLMHRLPP RGWLEGRSLM LHPGDRLEIE PMRRRLEAAG YRCVPEVGEH GEFAVRGALL DLFPMGGETP YRIDLFDDEV ESLRRFDPET QRTTDQVDAI ELLPAREFPT DEGGITRFRQ AFRAEFEGDP ARSFLYRAVS EGRIPGGIEY YLPLFFEETA TLFDYLPEGT LAIRLEGTDA TADGFWQQVQ DRYEQRTGDM DRPPLPPRRV FLDGDELRAG LNRRPQVVLH GEPGRGSDAD VDALPELAAR PQADRPLERL EQFHAGYPGR ILFTAESAGR RQGLQERLTR SGIEARSVQG WRDFLDGDVP AAITVAPLET GARIDGIAII PESALYGERA RQSRRRRSSA STDPAAVIRD LSDLHEGAPV VHEDHGVGRY VGLQSLSVGD VTTEFLTLEY AGGDKLYVPV SALDRISRYT GADADEAPQH RLGSDQWDKA RRHAAKRARD VAAELLDLYA RRQARAGDAC LFDDEAYEAF ASAFPFEETP DQQAAIQAVL DDLRSDQPMD RVVCGDVGFG KTEVAMRAAF AGVQAGRQVA MLVPTTLLAQ QHYQNFADRF ADWPVRIESL SRFTGKKGNE KTLARIASGE ADVVIGTHKL LGSEVQFKNL GLVIIDEEQR FGVRQKERLK RLRAEVDVLT LTATPIPRTL NMSMAGIRDL SVIATPPERR LAVKTFVQEW SDGLIREACQ RELQRGGQVY FLYNDVKSIE RTANQLRDLM PEARIGVAHG QMRERELEQV MLDFYHQRFD ILVCTTIIES GIDIPTANTI IIHRADRFGL AQLHQLRGRV GRSHHRAYAY LLAPPPNAMT ADALKRLEAI SQLEDLGVGF ALASHDLEIR GAGELLGDEQ SGQIQEVGFT LYSQLLERAV KDLKAGRDPA PEAELDTGVE VDLRLSALLP ADYLPDVHTR LVQYKRISSA RSDAELEELQ IEMIDRFGLL PDAARNLFRT ASLKLRAEAL GIRKVEAGPS GGTIHFGPQP QIDPGRLVQM VQQEPGKYRL DNQQRLHLSD DLSDETARFE AMERLLERLH ASEEVAG
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