| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1246 |
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| Symbol | |
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| ID | 4710482 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 1352262 |
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| End bp | 1354082 |
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| Gene Length | 1821 bp |
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| Protein Length | 606 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639855719 |
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| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
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| Protein accession | YP_001002823 |
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| Protein GI | 121998036 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGTACGC AAGCACAGGC TCCCGGCCAG CCCTTACCGG ATGGCGCACA GGCGCTCAAA
CAGGACCGCA GAACCTGGCC GACGTTCCGC CGGCTGTTTA TCGGGTACGT CCTGCCGCAC
TGGAAGGTGG GGGTGGTGGC GATCCTCGCG ATGCTGGCGC TGGCTGGCAC GCAGACCGGC
GTGGTGGCGT TGATCCGGCC ACTGCTCGAT GACGGCTTCG TGGAGCAGGA TGCGGCCACG
ATCCGCTTCT ATGCCCTATT GCTGATCGTC TTCATCGTTT TCCAGGGGAT TGCCCACTTC
ACCTCGCATT ACCTGATGAC CTGGATCGGT CGGCAGCTGG TCAAGCGGCT GCGGCTCGAT
GTCCACGATC GGCTGCTGGT CATGCCCAAC TGGGTCTTTG ATCAGCAGTC CTCGGGACGG
CTGGTCTCCA AGCTCACCTA CGAAGCGGAG CAGGTGGCCG GTGCGGTAAC GCGGGCGGTT
CTAAGCCTGA TCCAGGACGG CGCGCGGGTG GTCTTCCTGC TCGGCTATAT GACCTACCTC
TCGCCGTGGC TGATGCTGAT CGTGCTCGGG GTCCTGCCGG TCGTGGGCGG GATCATCGCC
TACATCACCA AGCGTTTCCG CAAGATCAGC AAGCGCATCC ACCACGCGGT GGGCGGGGTC
GGCAGTGTGG CTGAGGAGAG TGTCCACGGC TACCAGGTGG TCAAGGCGTT CGGGCAGGCG
GATCGCGAGC GGCAGCGATT CGAGCGCGTC AACGAGCGCA ATCGCAAGCA GTTCATGAAG
TTCATGGCCA CCAAGTACGC CTCGGTGCCG CTGATCCGCC TGGTGGCCGG CATTGCCCTG
GCAGTGGTGA TCTACCTGGT CACCGTCGAT GCGGTGGTCG AGACCATTAC CGTCGGTACC
TTCGTTTCGT TCGCCGGGGC CATTCTGCTG CTGAATCCGC CGCTCAAATC CCTGGTCGCG
GTCAACGCCA CGATCCAGAA GGGGCTGACC GCGGCGCAGA GCATCTTCGA TGTCGTCGAT
GCCCCGCAAG AGCCGGATCA CGGCTCCCGG ACCATCACTC GGGCCGAGGG GCGCGTCGAG
TTCGAAGGCC TGCGTTTCTC GTACGGTGGC GACCGCGAGG TCCTGTGCGG GATCGACCTG
GACGTGCGGG CCGGCGAGAC GGTGGCGCTG GTGGGCCCCT CGGGCAGTGG TAAGACGACA
TTGGTCAACC TGCTGCCGCG CTTCTATGAG CCGACCGAGG GCGAGATCCG CCTCGACGGG
GTTCCGTTGC AGGCGTACCG CCTCGCCGAC CTGCGCCGGC AATTCTCCAT GGTGGGGCAG
AATGTAATGC TGTTTAACGC CTCGGTGGCG GAGAACATCC GTTTCGGCGC GCAGGGTCCG
GTGAGCGATG AGCAGGTCCG AGCGGCGGCA GACGCGGCCA ACGCCACGGG CTTTATCGAG
GCCTTGCCCC AGGGCTTCGA GACCGAGGTG GGCGAGGACG GCGTGTTGCT CTCTGGCGGG
CAACGTCAGC GCATCGCCAT CGCCCGGGCG GTGCTCAAGG ATGCGCCGAT CCTGATCCTG
GATGAGGCGA CCTCGGCACT GGATACGGAG TCCGAGCGGC ACATCCAGGG GGCGCTGGAA
CGCCTGATGG AGGGGCGAAC CAGCTTCGTG ATCGCTCACC GGCTCTCTAC CGTGGAGAAC
GCCGATCAGA TCCTGTTCCT GGACGGCGGC CGTATCCTCG AGCGCGGGAC GCACCGCGAA
CTGCTGGATC GGGGAGGGCG CTACGCTGGC CTCTACCGCA TGCAGTTCGA AGACCGGTCC
GAGCCGCAGT CGGAGGGGTA G
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| Protein sequence | MSTQAQAPGQ PLPDGAQALK QDRRTWPTFR RLFIGYVLPH WKVGVVAILA MLALAGTQTG
VVALIRPLLD DGFVEQDAAT IRFYALLLIV FIVFQGIAHF TSHYLMTWIG RQLVKRLRLD
VHDRLLVMPN WVFDQQSSGR LVSKLTYEAE QVAGAVTRAV LSLIQDGARV VFLLGYMTYL
SPWLMLIVLG VLPVVGGIIA YITKRFRKIS KRIHHAVGGV GSVAEESVHG YQVVKAFGQA
DRERQRFERV NERNRKQFMK FMATKYASVP LIRLVAGIAL AVVIYLVTVD AVVETITVGT
FVSFAGAILL LNPPLKSLVA VNATIQKGLT AAQSIFDVVD APQEPDHGSR TITRAEGRVE
FEGLRFSYGG DREVLCGIDL DVRAGETVAL VGPSGSGKTT LVNLLPRFYE PTEGEIRLDG
VPLQAYRLAD LRRQFSMVGQ NVMLFNASVA ENIRFGAQGP VSDEQVRAAA DAANATGFIE
ALPQGFETEV GEDGVLLSGG QRQRIAIARA VLKDAPILIL DEATSALDTE SERHIQGALE
RLMEGRTSFV IAHRLSTVEN ADQILFLDGG RILERGTHRE LLDRGGRYAG LYRMQFEDRS
EPQSEG
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