| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1241 |
|---|
| Symbol | |
|---|
| ID | 4710473 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 1345783 |
|---|
| End bp | 1346760 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639855714 |
|---|
| Product | RluA family pseudouridine synthase |
|---|
| Protein accession | YP_001002818 |
|---|
| Protein GI | 121998031 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCT CTGATCCCAA GGTTCGACAC CATCAGGTAC TGGCCGACGA AGCCGGGCAG
CGAATCGACA ACTTCCTCCT GCGACAACTC AAGGGTGTAC CGCGCAGCCG AGTCTACCGC
CTGCTGCGGA AAGGGCAGGT GCGTGTTGAT GGTGGCCGCG CCAAGCCCAC GCGCCGGTTG
AGTGCCGGCG AGGTGGTGCG CATACCACCG GTTTCGGGGC AGCGCCAGAC AAGCCAACCC
GCCTCGGGGG GGCTCCCTGA TGGCCTGGAG GCGCGGCTGC GCCGCGGTGT GCTCTATGAG
GATGAGCGCC TGCTTGTGCT GGACAAGCCC TCGGGGCTGG CCGTCCACGG CGGCTCCACC
GTGCGCCTGG GTCTGGTGGA GGCGCTGCGA GGCCTGCGTC CGGATCTGCC CTTTATAGAG
CTGGTGCATC GACTCGACCA AGAGACGAGC GGATGCTTGA TGCTGGCCAA GCGTCGATCG
ACGCTGCGTC GGCTCCATGA ACAACTCCGG CAGGGCAAGG TGGAAAAGCA TTACACGACG
CTGCTGGTCG GGCCGTTGCG AGGCGTGACG CCGCTGCGCG TCGATGCGCC GCTGGAGCGT
TTGCCAGGCG CGCCTCGGGA ACGGCAGGTG CGTGTCAGCA AGCAGGGGCG GGCGGCCGTG
ACCGAATTCC TGCGGAAGCA GTCCTGGCCG CAGGCGACCC TGGTCACCGC ACGCCTGGAG
ACCGGCCGCA CCCACCAGAT TCGGGTCCAC GCTCGGCACA TCGGCCACCC GGTGGCGGGC
GATGAGCGCT ATGGTGATCG TGGGGCGAAC GCCACAATGC GGGATTACGG GCTGCGCCGG
CTGTTTCTGC ACGCCTCGTC GCTGCGTCTC CAGCATCCGG ATACCGGGGA ACCCCTCTGT
ATCGAGGCGC CGCTCAGCGA TGAGCTGAAG GCGGTCCTCG AACGGTTATC GCATTCACAA
GACGAGGAGT CAGCATGA
|
|---|
| Protein sequence | MSASDPKVRH HQVLADEAGQ RIDNFLLRQL KGVPRSRVYR LLRKGQVRVD GGRAKPTRRL
SAGEVVRIPP VSGQRQTSQP ASGGLPDGLE ARLRRGVLYE DERLLVLDKP SGLAVHGGST
VRLGLVEALR GLRPDLPFIE LVHRLDQETS GCLMLAKRRS TLRRLHEQLR QGKVEKHYTT
LLVGPLRGVT PLRVDAPLER LPGAPRERQV RVSKQGRAAV TEFLRKQSWP QATLVTARLE
TGRTHQIRVH ARHIGHPVAG DERYGDRGAN ATMRDYGLRR LFLHASSLRL QHPDTGEPLC
IEAPLSDELK AVLERLSHSQ DEESA
|
|---|
| |