Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hhal_1230 |
Symbol | |
ID | 4710438 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhodospira halophila SL1 |
Kingdom | Bacteria |
Replicon accession | NC_008789 |
Strand | + |
Start bp | 1335907 |
End bp | 1337559 |
Gene Length | 1653 bp |
Protein Length | 550 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 639855703 |
Product | 60 kDa inner membrane insertion protein |
Protein accession | YP_001002807 |
Protein GI | 121998020 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0706] Preprotein translocase subunit YidC |
TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain [TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0120976 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAGAATC AACGCCTCAT CCTCCTGATC GCCCTGGCCG GGATCAGTCT GCTGCTGTAC TTCGCCTGGG AGCGGGAGCA GATGGACCCT GCGGAGCCGG TGGTTGAAGA GCAGGAGTCG GAAGTCGATC AGGAGGCGCC GGACGCGCCG TCCCGGGCCG AGGAGCCGGA CGCTGGGGAC CCCATGGCTG AAGGGGTGGT GGACCCGGAC GATGAGGATG CCAAGCGGGT CCGCGTGAAG ACCGATCTGA TCGAGGCGGA GATCAGCACG CAGGGTGGTG ACATCCGGCA GCTGGACCTG CTCAAGCATC AGAAGGCCTC GGACGATCCA ACGCCCTACC GGCTGCTGCG CGACGAGGGC GAGCCGTTGT TTGTCGCCCA GGCTGGACTC GGTGGCGACG GGCCTGCGCC GGGCCGGGAT GCTCGTTACG AGGTGGATCA GGACGAGTTC GAACTGGCCG AGGGCGAGGA TACGCTCGAG GTCCCGCTGA TCTGGGAGGA AGACGGCGTC AAGGTGCGCA AGGTCTACAC CTTCCGTCGC GATAGCTATC TGGTCGACGT GCGCCACGAG GTGGAGAACA ACGCCGAGGA CGACTGGGCC GGCTTCCAGT ACGTGCAGCT GCGGCGGCGC CCGGACCCGG CGGGGACAAC CCCGTGGTAC ATCCACAGCT TCACCGGCGG CTCCCTCTAC ACGCAGGAGG ATCGCTTCAG CCGGATCTCG TTCAGTGACA TGGAAGACTC CGATCTGTCG CAGGACGAGC GCGACGGCTG GGCGGCGATG CTCCAGCACT ACTTTCTTGG GGTGATGATC CCGGAGCGGG GCGAGACCTA CCGGTACTAC ACCCGGGCCC TGCCGCAGGA GACCTACCTC CTGGGGATGT CGTCGCCCTG GCTGCAGGTG GCGGCCGGGG AGAGTGGTCA GAAGACCAAC CATCTGTTCG TTGGCCCCAA GGAGCAGGAC CGACTCACGG CGGTGGGGTC GGCGCTGGAT GTCGATGACC TGCGGCTGAC GGTCGACTAC GGGTTCCTGA CGATCCTCGC CAACCCCCTG TTCTGGGCGT TGGATCAGAT CGAAAACCTG GTGAAGAACT GGGGCGTGGC GATCCTGATC CTCACGCTGC TGATCAAGAT CGCCTTCTAC AAGCTGTCGG CGATCAGCTA TCGCTCGATG GCGAAGATGC GCAAGGTTCA GCCGAAGATG CAGCAGATCC GGGAGCGCTA CTCGGATGAT CGGCAGCAGA TGAATCAGGC GCTGATGGAG CTGTACAAGA AGGAGAAGAT CAATCCGCTC GGCGGCTGTC TGCCGATCCT GGTGCAGATC CCGGTGTTCA TCGCCCTGTA CTGGGTGTTG GTGGAGAGCG TTGAGCTGCG CCATGCACCG TTCATGCTGT GGATCCAGGA TCTGTCGAGC CGCGATCCGT ACTTCATCCT GCCGCTGCTG ATGGGCGCGA GCATGTTGGT GCAGATGAAG CTGAACCCGC CGCCGATGGA TCCGATCCAG AAGCGGGTGA TGCAGGTGCT GCCCTTCGTG TTCACGGGCT TCTTCATGCT GTTCCCGGCA GGGCTGGTAC TCTACTGGCT GACCAACAAC ATCCTGTCGA TCGCACAGCA ATGGTACATA CTGCGTCAGG TAGAGAAGTC CGACACGGCC TAG
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Protein sequence | MENQRLILLI ALAGISLLLY FAWEREQMDP AEPVVEEQES EVDQEAPDAP SRAEEPDAGD PMAEGVVDPD DEDAKRVRVK TDLIEAEIST QGGDIRQLDL LKHQKASDDP TPYRLLRDEG EPLFVAQAGL GGDGPAPGRD ARYEVDQDEF ELAEGEDTLE VPLIWEEDGV KVRKVYTFRR DSYLVDVRHE VENNAEDDWA GFQYVQLRRR PDPAGTTPWY IHSFTGGSLY TQEDRFSRIS FSDMEDSDLS QDERDGWAAM LQHYFLGVMI PERGETYRYY TRALPQETYL LGMSSPWLQV AAGESGQKTN HLFVGPKEQD RLTAVGSALD VDDLRLTVDY GFLTILANPL FWALDQIENL VKNWGVAILI LTLLIKIAFY KLSAISYRSM AKMRKVQPKM QQIRERYSDD RQQMNQALME LYKKEKINPL GGCLPILVQI PVFIALYWVL VESVELRHAP FMLWIQDLSS RDPYFILPLL MGASMLVQMK LNPPPMDPIQ KRVMQVLPFV FTGFFMLFPA GLVLYWLTNN ILSIAQQWYI LRQVEKSDTA
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