Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hhal_1070 |
Symbol | prpD |
ID | 4709860 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhodospira halophila SL1 |
Kingdom | Bacteria |
Replicon accession | NC_008789 |
Strand | - |
Start bp | 1161940 |
End bp | 1163385 |
Gene Length | 1446 bp |
Protein Length | 481 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 639855541 |
Product | 2-methylcitrate dehydratase |
Protein accession | YP_001002648 |
Protein GI | 121997861 |
COG category | [R] General function prediction only |
COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.327536 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCGGAG ACATCCGCAG CGCCCAGCGC CCCGACCCCG ATGCCGAGCT GGTGGCCATC GCCGACTACG TCAGCGGGAC CGCCATCGAC TCCGCCGAGG CCTACCAGAC CGCCCGCCAC TGCCTGATGG ACAGCCTCGC CTGCGCCATG ATGGCGCTCG ACTACCCGGC CTGTACCAAA CTGCTCGGCC CCATCGTCCC GGGGGCCGAG ATGCGCGACG GGGTGGTGGT GCCGGGCACC GCCCATCGGC TCGATCCCGT GCAGGGGGCG TTCAATATCG GCGCGCTGAT CCGCTGGCTG GACTTCAACG ATACCTGGCT GGCGGCGGAG TGGGGCCACC CTTCGGATAA CCTCGGTGGC ATCCTGGCGG CGGCCGATTA CGAGAGCCGT CGGCGCCTGG CGCTGGGTCA GACACCGCTG ACCATGCGCG AGGTGCTGAC TGCGGCCATC AAGGCCCACG AGATCCAGGG CGTGCTGGCG CTGGAGAACA GCTTCAACCG TGTCGGCCTC GACCACGTCC TCCTGGTGCG ACTGGCGACC ACCGCGGTGG CCACGCAGCT GCTCGGCGGC AGCCGCGAGG ACATCATCAA CGCCGTCTCC AACGCCTGGA TCGACGGCGG CGCCCTGCGG ACCTATCGCC ACGCCCCGAA CACCGGCTCG CGCAAGAGCT GGGCCGCCGG GGACGCCTCG GCCCGCGGGG TCCGGCTGGC GCTGATGAGC CTCACCGGCG AGATGGGCTA CCCGTCGGCA CTCACCGCCC AGGGGTGGGG CTTCCAGGAC GTGCTCTTCC GCGGGGAACC GATCCGCCGC TCCCAGGCGT ACGCCAGTTA CGTCATGGAG CACGTGCTGT TCAAGATCTC CTTCCCCGCC GAGTTCCACG CTCAGACCGC GGTGGAGGCG GCCCTGCAGC TGCACGCCGA GGTGGCGCCT CGACTCGACG AGGTCGACCG GGTGGTCATC GAGACCCAGG AGGCGGGGGT GCGGATCATC GACAAGACCG GCCCGCTGAA CAATCCTGCC GACCGCGACC ACTGTCTCCA GTACATGGTG GCGGTGCCGC TGATCTTCGG CCGCCTGACC GCCGCCGACT ACGAGGATGC GGTGGCGGCC GACCCGCGTA TCGACGCCCT GCGCGAGCGC ATGGAGGTCT CCGAGAACGA GGCCTTCTCC CGGGACTACA TGGACCCGGA GAAGCGCTCC ATCGGGAACG CCGTGCAGGT CTTCTTCAAG GATGGCTCCA AGACCGAGCG CATCGCCGTG GAGTACCCCA TCGGCCACCG GCGTCGCCGT GACGAGGGGA TCCCGGTGCT GGAGGAGAAG TTCCGCAACG CCCTGGCGGC GCGGTTCGCC CCGCGGCAGG CTGGCGCCAT CGAGGCGGCA CTGTCCGACC AGGCGGGTCT GGAACAGATG CCGGTCCACG CCTTTATGGA TCTGTGGCGG GCCTGA
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Protein sequence | MSGDIRSAQR PDPDAELVAI ADYVSGTAID SAEAYQTARH CLMDSLACAM MALDYPACTK LLGPIVPGAE MRDGVVVPGT AHRLDPVQGA FNIGALIRWL DFNDTWLAAE WGHPSDNLGG ILAAADYESR RRLALGQTPL TMREVLTAAI KAHEIQGVLA LENSFNRVGL DHVLLVRLAT TAVATQLLGG SREDIINAVS NAWIDGGALR TYRHAPNTGS RKSWAAGDAS ARGVRLALMS LTGEMGYPSA LTAQGWGFQD VLFRGEPIRR SQAYASYVME HVLFKISFPA EFHAQTAVEA ALQLHAEVAP RLDEVDRVVI ETQEAGVRII DKTGPLNNPA DRDHCLQYMV AVPLIFGRLT AADYEDAVAA DPRIDALRER MEVSENEAFS RDYMDPEKRS IGNAVQVFFK DGSKTERIAV EYPIGHRRRR DEGIPVLEEK FRNALAARFA PRQAGAIEAA LSDQAGLEQM PVHAFMDLWR A
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