| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1054 |
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| Symbol | |
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| ID | 4709816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | + |
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| Start bp | 1139274 |
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| End bp | 1140086 |
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| Gene Length | 813 bp |
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| Protein Length | 270 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639855525 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_001002632 |
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| Protein GI | 121997845 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.456181 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGATC ACTACGCCGT CGTCGGCAAC CCGATTGCCC ACAGCAAGTC GCCACAGATC
CACACCCGCT TCGCCGCCGA GGTGGGTGCC GATCTGCACT ACCACCGCCT GTGGGCCCCG
GAGGACCACT TCGCCCCCGT GGCCGAGGCG TTCTTCGCCG GCGGGGGGCA CGGGCTCAAC
GTCACCGTGC CGTTCAAGGG GGCGGCGTAC ACCTTCGCCG ATACCCTCAG CGATCGGGCG
CGGGCCGCCG GCGCCGTGAA CACCCTGCGC GCCGAGCCCG ACGGCCGGCA CTTTGGCGAC
AACACCGACG GTATCGGCCT GCTGCGCGAC CTGCAGACCA ACCACGGCAT CGACCTGGCC
GGCCGACGGC TGCTCCTGCT CGGCGCCGGC GGCGCCGCCC GGGGGGTGCT GCACGACCTG
CTCGGTGAAG ACCCGCGGAC AGTGGTGATC GCCAATCGCA CAGTGGACCG AGCCGAGGCA
CTGGCCGGCA ACGACCACCG GATCCGTGCC TGCGGCTTCG ATGTACTCGC CGGGGAACGC
TTCGAGGTGG TCATCAACAC CACGGCCGCC GGACTACAGG GCGAGATGCC GCCACTGCCC
GACGACCTCC TCGCCCCCGG CGCCACGGCC TACGATCTGG TTTACGCGGA CGAGGACACG
CCGTTCATGG CCTGGGCACG GGCCCGGGGC GCCGTCACCG TGTGTGACGG GTTGGGCATG
CTGGTCGAGC AGGCCGCGGA GTCTTTCTAT CAGTGGCGCG GCACCTACCC GCAAACGGCC
CCGGTGATCG AGGCGCTGCG CATCGGGGCC TGA
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| Protein sequence | MSDHYAVVGN PIAHSKSPQI HTRFAAEVGA DLHYHRLWAP EDHFAPVAEA FFAGGGHGLN
VTVPFKGAAY TFADTLSDRA RAAGAVNTLR AEPDGRHFGD NTDGIGLLRD LQTNHGIDLA
GRRLLLLGAG GAARGVLHDL LGEDPRTVVI ANRTVDRAEA LAGNDHRIRA CGFDVLAGER
FEVVINTTAA GLQGEMPPLP DDLLAPGATA YDLVYADEDT PFMAWARARG AVTVCDGLGM
LVEQAAESFY QWRGTYPQTA PVIEALRIGA
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