Gene Hhal_0898 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHhal_0898 
Symbol 
ID4709764 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhodospira halophila SL1 
KingdomBacteria 
Replicon accessionNC_008789 
Strand- 
Start bp973858 
End bp974991 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content69% 
IMG OID639855367 
ProductGTP cyclohydrolase II 
Protein accessionYP_001002476 
Protein GI121997689 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase
[COG0807] GTP cyclohydrolase II 
TIGRFAM ID[TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.235552 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATGAAC GAATGAGCGA GACGGTGCAG TTCAACAGTA TCGAGGAGAT CATCGAGGAC 
CTGCGCCAGG GGCGCATGGC GGTCGTCCTC GATGACGAAG ACCGGGAGAA CGAAGGCGAC 
CTGGTGATGC CGGCGAGCCT GATCCGCCCC GAGGACATCA ACTTCATGGC CCGCTACGGC 
CGGGGGCTGA TCTGCCTGAC CCTCACCCGG GAGCGCTGTG AGCAGCTGCG CCTGCCGTTG 
ATGGTCCATA ACAACGACGA GAAAAACACC ACGAACTTCA CGGTTTCCAT CGAGGCGGCG 
GAGGGGGTGA CCACCGGCAT CTCGGCCGCC GACCGGGCGC GCACCGTTCA GGCGGCGGTG 
GCCCCCGGCG CCCGCCCCGA GGATCTGGTC CAGCCCGGGC ACATCTTCCC GCTGATGGCC 
CAGCCCGGCG GCGTGCTTAC CCGCGCCGGG CACACCGAGG CCGGCTGCGA CCTGGCCCGG 
CTGGCCGGTT TCGCCCCGGC GGCGGTGATC GTCGAGATCC TCAACGAGGA CGGCACCATG 
GCCCGGCGCG ACGACCTCAT GGCGTTCGCT CGCACCCACG GGTTGAAGAT CGGCACCGTG 
GCCGATCTCA TCGCCTATCG GGTGCGCAAC GAGCGCTCGG TGGAGCACGT CGGTGCCTGC 
GAGCTGCCCA CCGAGTACGG CACGTTCCGT ATGCACACTT ACCAGGACAA CGTCAGCGGT 
GCGCTGCACT TCGCCCTGCT CGCCGGCCAG GTGGACGAGG AAACCCCGGC CCTGGTGCGC 
GTGCATCTCG AGAACCCGCT GGCCGACCTG CTCGGCGCCA CCGGGCCGCG CTGCGGCTGG 
CCGTTGCGCT CGGCGCTGCG CCAGGTGGCC GAGGCCGAAT CGGGTGTGGT GGTGGTGCTG 
CGCAACGCCG ATGCCAACGA CGACATCCTC GAGCACATGC GCTGCTATCA GGGCGGTGGC 
TGCAGCGAGG AGGCCGGCGG CGTGCCGCTG GATCTGCGCA CCTACGGCAT CGGCGCGCAG 
ATCCTCACCG ACCTCGGGGT GCGCCGCATG CGCGTGCTCA GCGCCCCGCG GCGCATGCAC 
GCCCTGTCCG GATTCGGCAT GGAAGTGGTG GAGTACGTCA CCCCCGAGGC TTGA
 
Protein sequence
MDERMSETVQ FNSIEEIIED LRQGRMAVVL DDEDRENEGD LVMPASLIRP EDINFMARYG 
RGLICLTLTR ERCEQLRLPL MVHNNDEKNT TNFTVSIEAA EGVTTGISAA DRARTVQAAV 
APGARPEDLV QPGHIFPLMA QPGGVLTRAG HTEAGCDLAR LAGFAPAAVI VEILNEDGTM 
ARRDDLMAFA RTHGLKIGTV ADLIAYRVRN ERSVEHVGAC ELPTEYGTFR MHTYQDNVSG 
ALHFALLAGQ VDEETPALVR VHLENPLADL LGATGPRCGW PLRSALRQVA EAESGVVVVL 
RNADANDDIL EHMRCYQGGG CSEEAGGVPL DLRTYGIGAQ ILTDLGVRRM RVLSAPRRMH 
ALSGFGMEVV EYVTPEA