| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0555 |
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| Symbol | |
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| ID | 4710563 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | + |
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| Start bp | 628541 |
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| End bp | 631708 |
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| Gene Length | 3168 bp |
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| Protein Length | 1055 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 639855013 |
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| Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
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| Protein accession | YP_001002143 |
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| Protein GI | 121997356 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
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| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.637208 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCGT TCGTCCACCC GGAGCCCGAG CAGCTGCTGC CCGCCGAGCG CCGCGCCCTG
GCCGCGGCCT ACCGCATCGA TGAACCCACC CGCAGCCGCG CCCTGCTTGA GGAGGCCGAC
TGCGATCCGG CGACCCGCTC CCGTATCCAG GAGCGCGCCC GGGGCCTGGT CCACGGCATG
ATCCGCGCCC AGCGCCGCCA GTCCTCGCTG ACCGCCCTGC TCCACGAGTA CGACCTCTCC
AGCGAGGAAG GAGTGGCGCT GATGTGCCTG GCGGAGGCAT TGCTGCGTAT CCCCGACGCG
CCGACTGCCG ATCAGCTGAT CCACGACAAG CTCGGCACCG GGGGCTGGTC GTCGCACCTG
GGGCGCGACC GGCGGTTGCT GGTCAACGCC GCCACCCTCG GCCTGGCCCT GACCGGCCGG
ATCCTGGACA CCCGCGACGC CGAGCGCTGG TTTGGAGATC GCCTCCACAC CGCCATCGCC
CGTCGCGGGG CCCCGCTGAT CCGCCGGGCG GTGCGGCGCT CGATGGGACT GCTTGGTGAG
ACCTTCGTCC TCGGCCGCGA CATCCCCGAG GCGCAGCGGC GCGCCCGCAA ACTCGAAGCC
AAGGGGTACC GCTACTCCTA CGACATGCTC GGCGAGGCGG CGCGCACCGA GGCCGACGCC
GAGCACTTCT TCCAGGCCTA CTGCCGCGGC ATCGAGCACT TCGGGCGCAG TGCCGACCCG
GATGCGCCCA TGGACGCCCG GGCCGAGGTC TCGGTGAAGC TCTCGGCCCT CGACCCGCGC
TTCGAGCCCG GTCAGGAGGA ACGCGTCCAG GCCACGGTCA TCCCCCGCTT GCAGGCGCTG
TGCCGGCGCG CCCGGGAGGC CGGCATCGCC CTATGCGTGG ACGCCGAGGA GGCCGCCCGG
ATCGACCTGA CACTGGATGT GCTTGAGGCG GTGATGGCCG ACCCGGAACT CGCCGACTGG
GACGGGCTGG GAATTGCGGT GCAGGCGTAC CAGAAGCGCG CCCCGGAGTG GATCGACTGG
CTGGCCGAGC GGGCCGGGCA CTACCGGCGC CGCCTGCGCA TCCGGCTGGT CAAGGGCGCC
TACTGGGATA CCGAGATCAA GGACTCACAG ATCCAGGGCC TGGACGACTA CCCGGTCTTC
ACCCGCAAGG CGGCCAGCGA TGTCTGCTTC CTGGCCTGCG CCCGGCGCAT GCTCCGCCAC
CCGCAGCAGA TCTATCCGCA GTTCGCCACC CACAACGCCC ACACCGTCGC CGCGGTGATG
GAACTGGCCG ACGAGCAGCC CTTCGAGTTT CAGCGCCTGC ACGGCATGGC TGATGACCTC
TACGATCAAC TGGTCGACGC CCGCCCCGGC CGCGGGGTGC CGGTGCGCAT CTACGCCCCG
GTGGGCCAGC ACGAGGCGCT GCTGCCCTAT CTCGTCCGCC GGCTGCTGGA GAACGGCGCC
AACTCCTCCT TCGTCAATCG GATCCACGAA GGCGACGTGG AAGAGCTGAT CGCCGACCCG
GTGGAGCACC TGCGCTCGCG GACGACCCTG CGCCACCCGC ACCTGCCGCT GCCGTCCGGG
ATTTTCGGCC CGGAGCGGGT CAACAGCCGC GGTATCGACT TCTCCAACCG GCAAGAGACC
GCCGCCCTGG CTGCTGCCAT GACCACCGCC GCCGAGCCTG CCCGCGAGGC GCGGCCGATC
ATCAACGGCC AGGGCGCCAC CGAGGCCGAC GGCACCTGGG CCGAGGTCTG CAGCCCCACG
GATACCGCCC AGCACGTCGG CCGGGTGCTG TGGGCCGGCC ACGAGCACCT GGAGCAGGCC
CTAGCCAGTG CCGCAGCGGC CTGGCCGCGC TGGGCCGCGA CGCCGGTGGA CGAGCGCGCC
CGAGCCCTGG AGCGCCTCGC CGACCTCTAC GAGGCGCACA CCGCCGAGCT GATGACCCTG
TGCACCCTGG AAGGCGGCAA GACCCTTAAG GACGGCATCG CCGAGGTGCG CGAGGCGGTG
GACTTCTGCC GCTACTACGC CGTCCAGGCG CGGCGGCTGA TGGGCGAACC GACCCCGTTA
CCCGGCCCCA CCGGCGAGAC CAACGCCCTG CAGCTGCACG GCCGCGGCAC CTACCTGTGC
ATCAGCCCCT GGAACCTGCC GCTGGCGATC TTCACCGGGC AGATCACCGC CGCCCTGGCC
GCCGGCAATG CGGTGATCGC CAAGCCGGCG GAGCAGACGC CGCTGATCGC CCACCGAGCC
GTGGAGCTCA TGCATCAGGC GGGCATCCCC GGTGACGTGC TCCACCTTCT GCCCGGCGAG
GGCCGGCGCA TCGGGCCGCC GCTGGTGGCC GATCGGCGGA TCGACGGGGT CGCCTTCACC
GGCTCGGTGG CCACGGCGCA GCAGATCCAC CGCACCCTGG CCGAGCGCGA TGGCCCCATC
GTTCCGCTGA TCGCCGAGAC CGGCGGCCTC AACGCCCTGA TCGTCGACTC CAGCGCCCTG
CCCGAGCAGG CGGTGGTGGA TGTACTGCGC TCGGCGTTCT TCAGCGCCGG CCAGCGCTGC
TCGGCGCTGC GCCTGCTGTG CATCCAGGAG GACATCGCTG AGCCGTTCCT GGCGATGCTG
CGCGGGGCCA TGGACGCCCT GCGGGTTGGT GATCCGCGCT GGCTGGCCAC CGACGTCGGC
CCGGTGATCG ACAGCGACGC CCGGGCGCGG CTGGAGGCCC ATCACGAGGC GATGGCCGCC
GCCGGCCGCG TGGTCCATCG GACACCGCTC GGCCAGGCCG GAGAGCGCGG GCACTTTGTG
CCGCCGTCGC TCTACCGGCT GGATGCCATC GAGGATCTGC AGGAGGAGTT CTTCGGGCCG
ATGCTCCACT ACACCACCTG GCGGGCGGGG GAGCTCGACT CGGTGGTGGA GCGGATCAAC
GCCGCCGGCT ACGGTCTCAC CTTCGGCGTC CACAGCCGCA TCGACAGCCA CCGGGAGATG
GCCACGCGCT CGATCCGCGC CGGAAACGCC TACGTCAACC GGGACATCGT CGGCGCGGTG
GTGGGCTCCC AGCCCTTCGG CGGCGAGGGG CTGTCGGGTA CCGGGTTCAA GGCCGGCGGA
CCGAACTATC TGCTGCGCTT CGTCAACGAA CGGGTGGTCA CCGAGAACAC GGCGGCGGCC
GGCGGCAACG CCTCCCTCTT CGCCTTGGGG GAGGACGACG AGGCGTAA
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| Protein sequence | MSAFVHPEPE QLLPAERRAL AAAYRIDEPT RSRALLEEAD CDPATRSRIQ ERARGLVHGM
IRAQRRQSSL TALLHEYDLS SEEGVALMCL AEALLRIPDA PTADQLIHDK LGTGGWSSHL
GRDRRLLVNA ATLGLALTGR ILDTRDAERW FGDRLHTAIA RRGAPLIRRA VRRSMGLLGE
TFVLGRDIPE AQRRARKLEA KGYRYSYDML GEAARTEADA EHFFQAYCRG IEHFGRSADP
DAPMDARAEV SVKLSALDPR FEPGQEERVQ ATVIPRLQAL CRRAREAGIA LCVDAEEAAR
IDLTLDVLEA VMADPELADW DGLGIAVQAY QKRAPEWIDW LAERAGHYRR RLRIRLVKGA
YWDTEIKDSQ IQGLDDYPVF TRKAASDVCF LACARRMLRH PQQIYPQFAT HNAHTVAAVM
ELADEQPFEF QRLHGMADDL YDQLVDARPG RGVPVRIYAP VGQHEALLPY LVRRLLENGA
NSSFVNRIHE GDVEELIADP VEHLRSRTTL RHPHLPLPSG IFGPERVNSR GIDFSNRQET
AALAAAMTTA AEPAREARPI INGQGATEAD GTWAEVCSPT DTAQHVGRVL WAGHEHLEQA
LASAAAAWPR WAATPVDERA RALERLADLY EAHTAELMTL CTLEGGKTLK DGIAEVREAV
DFCRYYAVQA RRLMGEPTPL PGPTGETNAL QLHGRGTYLC ISPWNLPLAI FTGQITAALA
AGNAVIAKPA EQTPLIAHRA VELMHQAGIP GDVLHLLPGE GRRIGPPLVA DRRIDGVAFT
GSVATAQQIH RTLAERDGPI VPLIAETGGL NALIVDSSAL PEQAVVDVLR SAFFSAGQRC
SALRLLCIQE DIAEPFLAML RGAMDALRVG DPRWLATDVG PVIDSDARAR LEAHHEAMAA
AGRVVHRTPL GQAGERGHFV PPSLYRLDAI EDLQEEFFGP MLHYTTWRAG ELDSVVERIN
AAGYGLTFGV HSRIDSHREM ATRSIRAGNA YVNRDIVGAV VGSQPFGGEG LSGTGFKAGG
PNYLLRFVNE RVVTENTAAA GGNASLFALG EDDEA
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