Gene Hhal_0427 details

Gene Information

• Locus tag: Hhal_0427
• Symbol: thrS
• ID: 4709337
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhodospira halophila SL1
• Kingdom: Bacteria
• Replicon accession: NC_008789
• Strand: +
• Start bp: 494641
• End bp: 496563
• Gene Length: 1923 bp
• Protein Length: 640 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 639854885
• Product: threonyl-tRNA synthetase
• Protein accession: YP_001002017
• Protein GI: 121997230
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0441] Threonyl-tRNA synthetase
• TIGRFAM ID: [TIGR00418] threonyl-tRNA synthetase

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.0436469
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCGCCA TTACCCTCCC TGACGGTTCC GTCAAAGCGT TCGACCACCC GGTCACCACC 
CGCGAGATCG CCGAGTCCAT CGGCCGCAAG CTGGCCAAGG ACGCCATTGT CGGGCGCGTG 
GACGGTGAGC TGATCGACCT GGATCGCCCC ATCGAGCACG ACGCCTACGT CGAGATCGTC 
ACCAGCAACG ACCCGGACGG GCTTGAGGTG ATCCGCCACT CGACGGCGCA CCTGATGGCC 
CAGGCGGTCA AGCAGCTCCA CCCGGAGATG CAGGTCACCA TCGGCCCGAC GGTGGATAAC 
GGCTTCTATT ACGACTTCGC CGGCGAGCGC TCCCTCTCGG AGGACGAGCT CGAGACCATC 
GAGCAGCGCA TGAGCGAGCT GGCCGAGGCG GATCACCCCG TCGAGCGCGA GGTCTGGGAC 
CGTGAGGCAG CGCGGCAGTT CTTCCTGGAG CAAGGCGAGA CCTACAAGGC GCAGATCATC 
GACGACCTGC CCGAGAGCGA GACCATCACG GTCTACCGCC AGGGCGACTT TGCCGATCTG 
TGCCGCGGCC CCCACGTGCC GAGCACCGGC AAGCTCAAGG CGTTCAAGCT GACTAAGGTG 
GCGGGCGCTT ACTGGCGCGG TGATCAGAAC AACGAGATGC TCCAACGCGT CTACGGCACC 
GCCTGGCCGG ACCGCAAGCA GCTCAAGGCC TACCTGGACC GCCTCGCCGA GGCCGAGCGG 
CGCGACCACC GGCGCCTCGG CCGGACCCAG GATCTCTTCC ACGTCCAGGA GGAGTCGCCG 
GGGATGGTCT TCTGGCACCC GCGCGGCTGG CGGCTCTACC TGGAGGTACA GGACTACATC 
CGCCGGCTGA TGCGCGACAA CGGCTACCAG GAGATCCACA CGCCGATGCT GGTAGATCGC 
AGCCTGTGGG AGCGCTCCGG GCACTGGGCG ATGTTCGCCG AGAACATGTT CGTCACCGAG 
TCGGAGTCCC GCGACTACGC GGTCAAGCCG ATGAACTGCC CATGCCACGT CGAGGTTTTC 
AAGCAGGGGT TGAAGAGCTA TCGCGACCTG CCCCTGCGCC TGGCGGAGTT CGGCTCCTGC 
CACCGCAACG AGCCCTCCGG CACGCTCCAC GGGCTGATGC GGGTGCGCGG CTTCGTGCAG 
GACGACGCGC ATATCTTCTG CACCGAAAAC CAGATCCAGG AGGAGGTGCG CACCTTCATC 
GACCTGGTCT ACCGCGCCTA CCGCGACTTC GGTTTCGAGG ACGTACTCAT CGCCCTCTCC 
ACCCGCCCGG ACGAGCGGGT GGGCGACGAC GCCCTCTGGG ACAAGGCCGA GTCGGCCCTG 
GCCACCGCGC TGGAGACGCA CGGGCTCGAC TACACCCTGC AGCCCGGTGA GGGAGCCTTC 
TACGGGCCGA AGATCGAGTT CTCCCTGCGC GACTGCCTGG AGCGCGTCTG GCAGCTGGGC 
ACCATTCAGG TGGACTTCTC CATGCCGGGC CGGCTGGGGG CGCAGTTCGT CGATGACGAC 
GGCGAGCGGC GTACGCCGGT GATGCTCCAC CGGGCTATTC TCGGGTCCCT GGAGCGCTTT 
ATCGGCATCC TGATCGAGCA CTACGGCGGC GCCCTGCCCA CCTGGCTCGC TCCGGTCCAG 
GCGGTGGTGC TCAACATCAC CGACCGCCAG GCCGACTACG CCCGCTCGGT GGAACAACAG 
CTGCTGGAAT CCGGCTTCCG CGCCGAGGCC GACTTGAGGA ACGAGAAGAT CGGCTATAAA 
ATCCGCGAGC ATACGTTGCA GAAGGTCCCC TACATGCTGG TGCTCGGGGA CCGGGAGCTG 
GAAAGTGGTA CGGTGGCCGT CCGCCACCGC GACGGCACCG ACCTCGGCTC CATGGAACTG 
GAAGAGCTCG TAGCGCGGCT TAGCAACGAT ATCGCGGGTC ACGAGCGCGA ACAGGAGGAT 
TAG 

 

Protein sequence

MPAITLPDGS VKAFDHPVTT REIAESIGRK LAKDAIVGRV DGELIDLDRP IEHDAYVEIV 
TSNDPDGLEV IRHSTAHLMA QAVKQLHPEM QVTIGPTVDN GFYYDFAGER SLSEDELETI 
EQRMSELAEA DHPVEREVWD REAARQFFLE QGETYKAQII DDLPESETIT VYRQGDFADL 
CRGPHVPSTG KLKAFKLTKV AGAYWRGDQN NEMLQRVYGT AWPDRKQLKA YLDRLAEAER 
RDHRRLGRTQ DLFHVQEESP GMVFWHPRGW RLYLEVQDYI RRLMRDNGYQ EIHTPMLVDR 
SLWERSGHWA MFAENMFVTE SESRDYAVKP MNCPCHVEVF KQGLKSYRDL PLRLAEFGSC 
HRNEPSGTLH GLMRVRGFVQ DDAHIFCTEN QIQEEVRTFI DLVYRAYRDF GFEDVLIALS 
TRPDERVGDD ALWDKAESAL ATALETHGLD YTLQPGEGAF YGPKIEFSLR DCLERVWQLG 
TIQVDFSMPG RLGAQFVDDD GERRTPVMLH RAILGSLERF IGILIEHYGG ALPTWLAPVQ 
AVVLNITDRQ ADYARSVEQQ LLESGFRAEA DLRNEKIGYK IREHTLQKVP YMLVLGDREL 
ESGTVAVRHR DGTDLGSMEL EELVARLSND IAGHEREQED